Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., protein translocase subunit SecD from Erwinia amylovora T8

 Score =  460 bits (1184), Expect = e-134
 Identities = 242/595 (40%), Positives = 372/595 (62%), Gaps = 15/595 (2%)

Query: 24  VLVTTIIILTLSAIPTWYGEQPSIQLQ-SKDATSVLRNVPELTQLLNKQNIQADEITQQG 82
           +L+  +++  L A+P  YGE P++Q+  ++ + +  + + ++   L + NIQ+  +  + 
Sbjct: 1   MLIVVLLVGLLYALPNLYGEDPAVQVTGARGSAASEQTLVQIQSALKQDNIQSKSVALEK 60

Query: 83  DNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSPIKLGLDLRGGV 142
                 FAN   Q +AR A+  ++ +   +  +     P WL  L   P+KLGLDLRGGV
Sbjct: 61  GAILARFANTDVQLRAREAIIKVLGDDYVVALNLAPATPAWLATLSAEPMKLGLDLRGGV 120

Query: 143 QFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKTEQPQALSHVRK 202
            FL+ VD+D A  + +D  +D ++  LR + +  V V+  GN   E++    +       
Sbjct: 121 HFLMEVDMDTALGKLQDQNIDNLRSDLREKSVPYVNVRKTGNYGLEIRFRDDKTRDEAVS 180

Query: 203 YLQENYRGWEIRQ-GSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQ 261
           YL   +R   I   GS+ L    S +   E +   +QQN+ I+R+R+ +LG+ E LVQRQ
Sbjct: 181 YLTTRHRDMVINSSGSNALTAVMSDERMREAREYAVQQNINILRNRVNQLGVAEPLVQRQ 240

Query: 262 GEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY-------DDLILEDGNGR 314
           G   I +ELPG+QD ++AK ++GATA+L F    +  DA +        D  + +   G+
Sbjct: 241 GADRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAAANGRVPGDSEVKDTREGQ 300

Query: 315 PVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYRE 374
           PV+L KR +L+G+HI ++ +  D     +VNISLD AGG IMS+F+   +GK MAT++ E
Sbjct: 301 PVVLYKRVILTGDHITDSTSSNDEYNQPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVE 360

Query: 375 YK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTA 428
           YK       N R    + E+VI+VA IQS+LG+ FRITG  +  EA+QL+LLLRAG+L A
Sbjct: 361 YKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIA 420

Query: 429 PVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMACLL 488
           P+ IVEERTIG ++G +NI  G  A   G+  ++ FM +WY++ G VA  ALL N+  ++
Sbjct: 421 PIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYKKFGLVATSALLANLVLIV 480

Query: 489 GLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFS 548
           G+++LLPGA LT+PGIAG+VLT+ +AVD NVLI ERI+++L  GR+  QAI  G+  AFS
Sbjct: 481 GIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFS 540

Query: 549 TILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWG 603
           +I+DAN+TT+I  +ILY++G G I+GFA+T  +G+ TSMF+ +  +RA++NL++G
Sbjct: 541 SIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLMYG 595