Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., protein translocase subunit SecD from Erwinia tracheiphila SCR3

 Score =  485 bits (1248), Expect = e-141
 Identities = 252/606 (41%), Positives = 385/606 (63%), Gaps = 15/606 (2%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVL-RNVPELTQLLNKQ 71
           ++N Y  WKY++L+  +++ TL A+P  YGE P++Q+     ++V  + + ++   L ++
Sbjct: 1   MLNRYPLWKYIMLIVVLVVGTLYALPNLYGEDPAVQVTGARGSAVSEQTLGQIQNALKQE 60

Query: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131
           NIQ+  I  +       FAN   Q +AR+AL  ++ E   +  +     P WL  L   P
Sbjct: 61  NIQSKSIALENGAILARFANGDVQLRARDALARILGEDFVVALNLAPATPAWLAMLSAEP 120

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191
           +KLGLDLRGGV FL+ VD+D A  + ++  +D+++  LR   +    V+   N   E++ 
Sbjct: 121 MKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRERNIPYANVRKTDNYGLEIRF 180

Query: 192 EQPQALSHVRKYLQENYRGWEI-RQGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEE 250
              Q       +L   +R   I   GS+ L+   S     E +   +QQN+ I+R+R+ +
Sbjct: 181 RDTQTRDDASSWLTSRHRDLVIGNSGSNLLRAVMSDDRLREAREYAVQQNINILRNRVNQ 240

Query: 251 LGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY------- 303
           LG+ E LVQRQG   I +ELPG+QD ++AK ++GATA+L F    +  DA +        
Sbjct: 241 LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAAANGRVPG 300

Query: 304 DDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKH 363
           D  +    NG+ V+L KR +L+G+HI ++ +  D    ++VNISLD AGG IMS+F+  +
Sbjct: 301 DSEVKNTRNGQSVVLYKRVILTGDHITDSTSSQDEYNQAQVNISLDSAGGTIMSNFTKDN 360

Query: 364 IGKPMATVYREYK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQL 417
           IGKPMAT++ EYK       N R    + E+VI+VA IQS+LG+ FRITG  +  EA+QL
Sbjct: 361 IGKPMATLFVEYKDSGKKDANGRAILAKQEEVINVANIQSRLGNSFRITGISNPTEARQL 420

Query: 418 ALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVAN 477
           +LLLRAG+L AP+ IVEERTIG ++G++NI  G  A   G+  ++ FM ++YR+ G +A 
Sbjct: 421 SLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGLIASILFMVIYYRKFGVIAT 480

Query: 478 VALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQ 537
            AL+ N+  ++G+++LLPGA LT+PGIAG+VLT+ +AVD NVLI ERI+++L  GR+  Q
Sbjct: 481 TALIANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQ 540

Query: 538 AIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAL 597
           AI  G+  AFS+I+DAN+TT+ITAVILY++G G I+GFA+T  +G+ TSMF+ +  +RA+
Sbjct: 541 AIHEGYRGAFSSIVDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAI 600

Query: 598 INLVWG 603
           +NL++G
Sbjct: 601 VNLLYG 606