Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., protein-export membrane protein, SecD/SecF family from Enterobacter asburiae PDN3

 Score =  458 bits (1178), Expect = e-133
 Identities = 242/595 (40%), Positives = 374/595 (62%), Gaps = 15/595 (2%)

Query: 24  VLVTTIIILTLSAIPTWYGEQPSIQLQ-SKDATSVLRNVPELTQLLNKQNIQADEITQQG 82
           +LV  I++  L A+P  YGE P++Q+  ++   +  + + ++ + L ++ I A  +  + 
Sbjct: 1   MLVVVILVGLLYALPNLYGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEE 60

Query: 83  DNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSPIKLGLDLRGGV 142
                 F     Q +AR AL  ++ +   +  +     P+WL  +   P+KLGLDLRGGV
Sbjct: 61  GAILARFDTTDTQLRAREALMGVLGDKYVVALNLAPATPRWLAAMKAEPMKLGLDLRGGV 120

Query: 143 QFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKTEQPQALSHVRK 202
            FL+ VD+D A  + ++  +D+++  LR + +    V+   N    +      A      
Sbjct: 121 HFLMEVDMDTALGKLQEQNIDSLRSDLRDKGIAYTTVRKEDNYGMSITFRDSAARDQAVD 180

Query: 203 YLQENYRGWEIR-QGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQ 261
           YL + +R   I  QGS+QL+   +     E +   +QQN+ I+R+R+ +LG+ E LVQRQ
Sbjct: 181 YLTQRHRDLVITSQGSNQLRAVMTDARLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQ 240

Query: 262 GEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY-------DDLILEDGNGR 314
           G   I +ELPG+QD ++AK ++GATA+L F    S  D  +        D  + +   G+
Sbjct: 241 GADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDQSAAAAGRIPGDSEVKQTREGQ 300

Query: 315 PVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYRE 374
           PV+L KR +L+G+HI ++ +  D     +VNISLD AGG IMS+F+  +IGKPMAT++ E
Sbjct: 301 PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE 360

Query: 375 YK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTA 428
           YK       N R   V+ E+VI++A IQS+LG+ FRITG  +  EA+QL+LLLRAG+L A
Sbjct: 361 YKDSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIA 420

Query: 429 PVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMACLL 488
           P+ IVEERTIG +LG +NI  G  A   G+ +++ FM  +Y++ G +A  AL+ N+  ++
Sbjct: 421 PIQIVEERTIGPTLGMQNIQQGLEACLAGLVVSILFMIFFYKKFGLIATSALIANLVLII 480

Query: 489 GLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFS 548
           G+++LLPGA LT+PGIAG+VLT+ +AVD NVLI ERI+++LS GR+  QAID G+  AFS
Sbjct: 481 GIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSIQQAIDEGYKGAFS 540

Query: 549 TILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWG 603
           +I DAN+TT+I  +ILY++G G I+GFA+T G+G+ TSMF+ +  +RA++NL++G
Sbjct: 541 SIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG 595