Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Protein translocase subunit SecD from Escherichia coli ECRC62

 Score =  454 bits (1168), Expect = e-132
 Identities = 240/595 (40%), Positives = 376/595 (63%), Gaps = 15/595 (2%)

Query: 24  VLVTTIIILTLSAIPTWYGEQPSIQLQ-SKDATSVLRNVPELTQLLNKQNIQADEITQQG 82
           +L+  I+I  L A+P  +GE P++Q+  ++   +  + + ++ + L ++ I A  +  + 
Sbjct: 1   MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEE 60

Query: 83  DNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSPIKLGLDLRGGV 142
                 F +   Q +AR AL  ++ +   +  +     P+WL  +   P+KLGLDLRGGV
Sbjct: 61  GAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGV 120

Query: 143 QFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKTEQPQALSHVRK 202
            FL+ VD+D A  + ++  +D+++  LR + +    V+   N    +     +A      
Sbjct: 121 HFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIA 180

Query: 203 YLQENYRGWEIR-QGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQ 261
           YL + +    I  QGS+QL+   S    SE +   +QQN+ I+R+R+ +LG+ E +VQRQ
Sbjct: 181 YLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ 240

Query: 262 GEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY-------DDLILEDGNGR 314
           G   I +ELPG+QD ++AK ++GATA+L F    +  D  +        D  + +   G+
Sbjct: 241 GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQ 300

Query: 315 PVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYRE 374
           PV+L KR +L+G+HI ++ +  D     +VNISLD AGG IMS+F+  +IGKPMAT++ E
Sbjct: 301 PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE 360

Query: 375 YK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTA 428
           YK       N R   V+ E+VI++A IQS+LG+ FRITG  +  EA+QL+LLLRAG+L A
Sbjct: 361 YKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIA 420

Query: 429 PVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMACLL 488
           P+ IVEERTIG +LG +NI  G  A   G+ +++ FM ++Y++ G +A  AL+ N+  ++
Sbjct: 421 PIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIV 480

Query: 489 GLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFS 548
           G+++LLPGA L++PGIAG+VLT+ +AVD NVLI ERI+++LS GR   QAID G+  AFS
Sbjct: 481 GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFS 540

Query: 549 TILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWG 603
           +I DANITT+I  +ILY++G G I+GFA+T G+G+ TSMF+ +  +RA++NL++G
Sbjct: 541 SIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG 595