Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., protein translocase subunit SecD from Dickeya dianthicola ME23

 Score =  481 bits (1237), Expect = e-140
 Identities = 257/606 (42%), Positives = 382/606 (63%), Gaps = 15/606 (2%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRN-VPELTQLLNKQ 71
           ++N Y  WKY++L+ TI++  L A+P  YGE P+IQ+     T+   + + ++  +L +Q
Sbjct: 1   MLNRYPLWKYLMLIVTIVVGLLYALPNLYGEDPAIQVTGARGTAASESTLVQIQNVLKEQ 60

Query: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131
           NI +  I  +       F+    Q +AR  L   + E   +  +     P WL  LG  P
Sbjct: 61  NIASKSIALENGAILARFSTSDVQLRAREVLLNALGEKFVVALNLAPATPTWLRMLGAEP 120

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191
           +KLGLDLRGGV FL+ VD+D A  + ++  MD+++  LR + ++   V+   N   ++  
Sbjct: 121 MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKGIQYASVRKSDNYGVDILF 180

Query: 192 EQPQALSHVRKYLQENYRGWEIRQ-GSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEE 250
              Q       YL   +R   +   GSD L+   S     E +   +QQN+ I+R+R+ +
Sbjct: 181 RDGQLRDDAVNYLAPRHRDLVLNSSGSDTLRAVMSDARLGEAREYAVQQNINILRNRVNQ 240

Query: 251 LGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY------- 303
           LG+ E LVQRQG   I +ELPG+QD ++AK ++GATA+L F    S  D  +        
Sbjct: 241 LGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPVALTNGRVPG 300

Query: 304 DDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKH 363
           D  ++   +G PV L KR +L+G+HI ++ +G D     +VNISLD AGG +MS+F+  +
Sbjct: 301 DTEVMNMRDGGPVALYKRVILTGDHITDSTSGNDEYNRPQVNISLDSAGGNMMSNFTKDN 360

Query: 364 IGKPMATVYREYK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQL 417
           IGKPMAT++ EYK       N R    + E+VI+VATIQS+LG+ FRITG  +  EA+QL
Sbjct: 361 IGKPMATLFVEYKDSGKKDANGRAVLEKQEEVINVATIQSRLGNSFRITGINNPNEARQL 420

Query: 418 ALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVAN 477
           +LLLRAG+L AP+ IVEERTIG +LG +NI  G  A   G+A+++ FM  +Y++ G +A 
Sbjct: 421 SLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIAT 480

Query: 478 VALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQ 537
            ALL+N+  ++G+++LLPGA LT+PGIAG+VLT+ +AVD NVLI ERI+++LS GR   Q
Sbjct: 481 SALLLNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQ 540

Query: 538 AIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAL 597
           AID G+  AFS+I DAN+TT+I  +ILY+IG G I+GFA+T G+G+ TSMF+ +  +RA+
Sbjct: 541 AIDEGYRGAFSSIFDANVTTLIKVLILYAIGTGSIKGFAITTGIGVATSMFTAIVGTRAI 600

Query: 598 INLVWG 603
           +NL++G
Sbjct: 601 VNLLYG 606