Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., SecYEG protein translocase auxillary subunit from Escherichia coli BL21

 Score =  470 bits (1210), Expect = e-137
 Identities = 246/606 (40%), Positives = 384/606 (63%), Gaps = 15/606 (2%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQ-SKDATSVLRNVPELTQLLNKQ 71
           ++N Y  WKYV+L+  I+I  L A+P  +GE P++Q+  ++   +  + + ++ + L ++
Sbjct: 1   MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEE 60

Query: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131
            I A  +  +       F +   Q +AR AL  ++ +   +  +     P+WL  +   P
Sbjct: 61  KITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEP 120

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191
           +KLGLDLRGGV FL+ VD+D A  + ++  +D+++  LR + +    V+   N    +  
Sbjct: 121 MKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITF 180

Query: 192 EQPQALSHVRKYLQENYRGWEIR-QGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEE 250
              +A      YL + +    I  QGS+QL+   S    SE +   +QQN+ I+R+R+ +
Sbjct: 181 RDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQ 240

Query: 251 LGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY------- 303
           LG+ E +VQRQG   I +ELPG+QD ++AK ++GATA+L F    +  D  +        
Sbjct: 241 LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPG 300

Query: 304 DDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKH 363
           D  + +   G+PV+L KR +L+G+HI ++ +  D     +VNISLD AGG IMS+F+  +
Sbjct: 301 DSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN 360

Query: 364 IGKPMATVYREYK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQL 417
           IGKPMAT++ EYK       N R   V+ E+VI++A IQS+LG+ FRITG  +  EA+QL
Sbjct: 361 IGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQL 420

Query: 418 ALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVAN 477
           +LLLRAG+L AP+ IVEERTIG +LG +NI  G  A   G+ +++ FM ++Y++ G +A 
Sbjct: 421 SLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIAT 480

Query: 478 VALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQ 537
            AL+ N+  ++G+++LLPGA L++PGIAG+VLT+ +AVD NVLI ERI+++LS GR   Q
Sbjct: 481 SALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQ 540

Query: 538 AIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAL 597
           AID G+  AFS+I DANITT+I  +ILY++G G I+GFA+T G+G+ TSMF+ +  +RA+
Sbjct: 541 AIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAI 600

Query: 598 INLVWG 603
           +NL++G
Sbjct: 601 VNLLYG 606