Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., preprotein translocase subunit SecF from Alteromonas macleodii MIT1002

 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 63/274 (22%), Positives = 125/274 (45%), Gaps = 34/274 (12%)

Query: 338 NMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRS---EKVISVAT 394
           ++G++ +N  LD  GG ++       +G         Y+  A  E +R+   E     A 
Sbjct: 33  SLGVNSLNWGLDFTGGTLIE------VG---------YEDAANLEGIRAQLNEANFEDAI 77

Query: 395 IQSQLGSQ---FRIT---GAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIA 448
           +Q+   SQ    RI    G  ++   +Q+   LRA      +  +E   +G ++GEE   
Sbjct: 78  VQNFGSSQDVLIRIAPRDGVKAVTIGEQVLAALRADGTEVDMRRIE--FVGPNVGEELTE 135

Query: 449 NGFAALALGMAMTLTFMAL---WYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIA 505
            G  A+ + +   L ++A+   W   LG V+  AL  ++   LGL ++L      L  +A
Sbjct: 136 QGGLAMLVALLCILVYVAMRFEWRFALGSVS--ALAHDVILTLGLFSVLQ-IEFDLTVLA 192

Query: 506 GLVLTVGMAVDTNVLIFERIRDKLSEGRNF--AQAIDTGFDSAFSTILDANITTMITAVI 563
            ++  +G +++  +++ +RIR+   + R     + I+       +  +  ++TT++  V 
Sbjct: 193 AVLAVIGYSLNDTIVVCDRIRENFRKIRKGEPVEIINISLTQTLNRTIITSLTTVLVLVA 252

Query: 564 LYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAL 597
           L+  G   I GFA  L  G++   +S V+ + ++
Sbjct: 253 LFYKGGALIHGFATALLFGVVVGTYSSVYIASSV 286