Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., protein-export membrane protein SECD from Agrobacterium fabrum C58

 Score =  277 bits (709), Expect = 1e-78
 Identities = 163/494 (32%), Positives = 288/494 (58%), Gaps = 43/494 (8%)

Query: 121 PKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQ 180
           P W  +   + + LGLDL+GG   +L ++     +E+ ++++  V+  LR   +R   + 
Sbjct: 37  PAWYKD---NKVTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRTQLRDANIRYSGLT 93

Query: 181 AMGNDAFEVKTEQPQALSHVRKYLQENYR--------GWEIRQ------GSDQLQVQPSQ 226
             G    +V+   P  +   +  L++  +        G  I +      G   L++  + 
Sbjct: 94  GNGQQ-IQVRISDPAQMEAAKTALRDLTQPVSAGTLVGGSITEVTMNDGGDSLLRLNLTD 152

Query: 227 QNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGAT 286
           +      ++ + Q+++++R R++E+G TE L+QRQG   I +++PG+QDP + K+++  T
Sbjct: 153 EGIDYRLSSAVSQSIEVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQT 212

Query: 287 ASLAF---------YEAKSPTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVD 337
           A L+F          +A +     + + L  +D    P ++ +R ++SG+++V+A+A  +
Sbjct: 213 AKLSFRMVDTTMPAQDAMNGRPPATSEVLYSQDDPPVPYLVERRALVSGDNLVDAQASFN 272

Query: 338 NMGMSEV-NISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQ 396
                 V     D  G +  +  + +++GKP A V                +VIS   I+
Sbjct: 273 QQTNEPVVTFRFDSRGAQRFAQATQQNVGKPFAIVL-------------DNQVISAPVIR 319

Query: 397 SQL-GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALA 455
             + G   +I+G+ S++ A  LA+LLRAG+L A +T+VEERT+G SLG ++I  G  A A
Sbjct: 320 EPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASA 379

Query: 456 LGMAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAV 515
           +G    L FM ++Y   G +AN+AL+VN+  L+ +++++ G+ LTLPGIAG+VLT+GMAV
Sbjct: 380 IGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVI-GSTLTLPGIAGIVLTIGMAV 438

Query: 516 DTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGF 575
           D+NVLI+ERIR+++  G+   QA+D GF  AF+TI+DAN+TT+I A +L+ +G GP++GF
Sbjct: 439 DSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTTLIVASVLFYMGTGPVKGF 498

Query: 576 ALTLGLGLLTSMFS 589
           A+TL +G++T++F+
Sbjct: 499 AVTLAVGIITTVFT 512