Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., Protein-export membrane protein SecF (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  189 bits (479), Expect = 9e-53
 Identities = 106/289 (36%), Positives = 168/289 (58%), Gaps = 15/289 (5%)

Query: 19  ISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGESVSATPS 78
           IS LL++ ++    ++G N GLDFTGG V E  +        + + LQ    E       
Sbjct: 29  ISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEPQLQNF 88

Query: 79  GEEGRWVIRYP----------LAAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQELI 128
           G     ++R P          L ++  T ++ AT  +    +++ V     G  VG +L 
Sbjct: 89  GSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFV-----GPSVGADLA 143

Query: 129 DQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAV 188
             G +ALL+ L+SIL Y+ FRFEWRLA+G ++AL HDVI+ LG  ++  +E +LT+ A++
Sbjct: 144 QTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASL 203

Query: 189 LAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALW 248
           ++V+GYSLNDSI++SDRIRE     ++    +I + ++  T  RT++TSGTTL+ I  L+
Sbjct: 204 MSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLVVILMLY 263

Query: 249 LMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLPVELD 297
           L GG  L+GF++ M IG+  GT SSI + + L   LG++ +H L  +++
Sbjct: 264 LFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVE 312