Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., protein-export membrane protein, SecD/SecF family from Kangiella aquimarina DSM 16071

 Score =  196 bits (498), Expect = 6e-55
 Identities = 118/300 (39%), Positives = 179/300 (59%), Gaps = 12/300 (4%)

Query: 3   DYLKSRIRPIRYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLM 62
           D+LK     IR     +S +L++ S+ +F  KGLN GLDFTGG + E           + 
Sbjct: 11  DFLK-----IRKFAFALSAILIIASIVSFFTKGLNYGLDFTGGTLVEVGYEQDADLPNIR 65

Query: 63  DQLQPVLGESVSATPSGEEGRWVIRYPLA--AEDATPVDIATELHHISDQVQIVSN--SM 118
            QL  +          G      IR P     E+A   D+       SD  +++    S 
Sbjct: 66  QQLDDIKINGAVVQNFGSAKVVQIRMPQQDHIENAKVSDVVLAAL-ASDGSKVIKRDQSF 124

Query: 119 VGSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQM 178
           VG  VG+EL +QGGLA+++ L+ I+ Y++ RFEW+ + G++ AL HDVI+V+GFF+IT +
Sbjct: 125 VGPVVGEELKEQGGLAMIVALICIMIYVALRFEWKFSVGSVAALAHDVIIVVGFFSITSV 184

Query: 179 EFNLTVFAAVLAVLGYSLNDSIIISDRIRE-LLLAKQQTPTADINDQAIIATFSRTMVTS 237
           EF+LTV AA+LAV+GYSLND+I++ DRIRE  LL ++ TP   IN+ +I  T SRT++TS
Sbjct: 185 EFDLTVLAALLAVIGYSLNDTIVVFDRIRENFLLMRKATPEEVINN-SINLTLSRTVMTS 243

Query: 238 GTTLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLPVELD 297
            TT++ + AL+  GG  +  FA A+ +G++ GT+SS+ I +     LG+  +  +P E++
Sbjct: 244 LTTMLVLLALFFFGGQTIHSFAEALIVGVLIGTYSSVFIASPTTLALGVSKEDLMPPEVE 303