Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., preprotein translocase subunit SecF from Alteromonas macleodii MIT1002

 Score =  189 bits (479), Expect = 9e-53
 Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 12/301 (3%)

Query: 2   VDYLKSRIRPIRYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQL 61
           V++++ RI  +     ++S +L++ S  +  +  LN GLDFTGG + E     +     +
Sbjct: 10  VNFMRLRIPAM-----VLSTVLILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDAANLEGI 64

Query: 62  MDQLQPVLGESVSATPSGEEGRWVIRYPLAAEDATPV-----DIATELHHISDQVQIVSN 116
             QL     E       G     +IR  +A  D          +   L     +V +   
Sbjct: 65  RAQLNEANFEDAIVQNFGSSQDVLIR--IAPRDGVKAVTIGEQVLAALRADGTEVDMRRI 122

Query: 117 SMVGSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAIT 176
             VG  VG+EL +QGGLA+L+ LL IL Y++ RFEWR A G++ AL HDVIL LG F++ 
Sbjct: 123 EFVGPNVGEELTEQGGLAMLVALLCILVYVAMRFEWRFALGSVSALAHDVILTLGLFSVL 182

Query: 177 QMEFNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVT 236
           Q+EF+LTV AAVLAV+GYSLND+I++ DRIRE     ++    +I + ++  T +RT++T
Sbjct: 183 QIEFDLTVLAAVLAVIGYSLNDTIVVCDRIRENFRKIRKGEPVEIINISLTQTLNRTIIT 242

Query: 237 SGTTLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLPVEL 296
           S TT++ + AL+  GGA + GFA A+  G++ GT+SS+ I + +   LG+  +  +P ++
Sbjct: 243 SLTTVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKEDLMPPQV 302

Query: 297 D 297
           +
Sbjct: 303 E 303