Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., protein-export membrane protein SECD from Agrobacterium fabrum C58

 Score =  153 bits (387), Expect = 1e-41
 Identities = 87/267 (32%), Positives = 146/267 (54%), Gaps = 3/267 (1%)

Query: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTK-SQLMDQLQPVLGE 71
           R +  +I+ ++M+  +G F  KGLN+G+DF GG V E          + + ++L  +   
Sbjct: 553 RRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRERLNQLNLG 612

Query: 72  SVSATPSGEEGRWVIRYPL--AAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQELID 129
            + A   G     +IR       E+A    I      + D+       +VG  V  +L  
Sbjct: 613 EIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGELEDKYDFRRVEVVGPAVSGDLTV 672

Query: 130 QGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAVL 189
              + +L+ + +I+ Y+  RFEW+ A GA+++++HDV+  +G F    +EFNLT  AA+L
Sbjct: 673 TSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLGIEFNLTSIAAIL 732

Query: 190 AVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALWL 249
            ++GYSLND+++I DR+RE L   ++ P + I D ++  T SRT++T  T L+ + AL+L
Sbjct: 733 TIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVLLALLALYL 792

Query: 250 MGGAPLQGFAIAMFIGIISGTWSSISI 276
            GG  ++ F  AM  G+  G +SS+ I
Sbjct: 793 FGGEVIRSFTFAMLFGVGIGVFSSVYI 819



 Score = 66.6 bits (161), Expect = 2e-15
 Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 4/182 (2%)

Query: 113 IVSNSMVGSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGF 172
           +V    VG  +G + I  G  A  I  + +L ++ F F       A +AL+ +V++++  
Sbjct: 356 VVEERTVGPSLGNDSITAGLTASAIGAVGVLIFM-FVFYGFFGLLANIALIVNVVMLIAV 414

Query: 173 FAITQMEFNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSR 232
            ++      L   A ++  +G +++ +++I +RIRE +  K   P     D      F+ 
Sbjct: 415 LSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIREEV--KSGKPLIQALDNGFTRAFAT 472

Query: 233 TMVTSGTTLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISI-GTVLPEWLGLESKHY 291
            +  + TTL+  S L+ MG  P++GFA+ + +GII+  +++ ++   +   W+      +
Sbjct: 473 IIDANLTTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKH 532

Query: 292 LP 293
           LP
Sbjct: 533 LP 534