Pairwise Alignments

Query, 700 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron) from Variovorax sp. SCN45

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 187 FMTILSQSHTLTVIYNSIALGIAVGVGATFFGLIFAIYTTRIAKRSAFIARVFSILPIVT 246
           +  +L+ S  L  + N++ L IAV +     G    IY  R A     +      LP+  
Sbjct: 50  YFAVLTDSRYLASMANTVVLSIAVTLATLVLGAAVGIYLARHAFVGKRVLLSLLTLPLSF 109

Query: 247 PPFIVGLGVTLMLGRSGYITELMVDGFGLQKTNWLYGFTGIWLAQVLAFAPMSFMILDGA 306
           P  I+G  V L+ GR G + +L    FG Q+  + YG  G++LA +    P +      A
Sbjct: 110 PGVIIGFFVILLGGRQGVVADLSDSLFG-QRITFAYGLLGLFLAYLYFSLPRAIATYTAA 168

Query: 307 LKSLHPSLEEASYTLKANRYQTFFGIIMPLLKPALANSFLIIFVQSLADFSNPLVLGGSF 366
            +S++  LEEA+ +L A+R +    + MP L P       I+F  S+  F     L   F
Sbjct: 169 AESMNTQLEEAARSLGASRLRVARDVWMPELAPTTLACGAILFATSMGAFGTAFTLASKF 228

Query: 367 DVLATQIYFYIAGAQLDYASASTLGSVLLLFSLAIFVVQYL 407
           +V+   IY        +YA+ +   S+ +   L  ++V ++
Sbjct: 229 EVIPITIY----NEFTNYANFALAASLSISLGLVTWLVLFV 265



 Score = 40.8 bits (94), Expect = 8e-08
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 490 SLITTMIYAGVAAPITALFGLLIAYVVVRQQFYGKKVIEFSTMLCFAVPGTVAGVSYIL- 548
           S+  T++ +      T + G  +   + R  F GK+V+     L  + PG + G   IL 
Sbjct: 62  SMANTVVLSIAVTLATLVLGAAVGIYLARHAFVGKRVLLSLLTLPLSFPGVIIGFFVILL 121

Query: 549 -------------AFNDAPIYLTGTAAIVVISMVMRNVPVGIRSGIAGLGQLDKSLDEAS 595
                         F     +  G   +  ++ +  ++P  I +  A    ++  L+EA+
Sbjct: 122 GGRQGVVADLSDSLFGQRITFAYGLLGL-FLAYLYFSLPRAIATYTAAAESMNTQLEEAA 180

Query: 596 LSLRASSLQTIRYIILPLLRPAILSTLVYSFVRAM 630
            SL AS L+  R + +P L P  L+     F  +M
Sbjct: 181 RSLGASRLRVARDVWMPELAPTTLACGAILFATSM 215