Pairwise Alignments

Query, 700 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  115 bits (289), Expect = 4e-30
 Identities = 131/512 (25%), Positives = 226/512 (44%), Gaps = 41/512 (8%)

Query: 195 HTLTVIYNSIALGIAVGVGATFFGLIFAIYTTRIAKRSAFIARVFSILPIVTPPFIVGLG 254
           +TL+  +  + + +A+G GA      FA+  T    R   I     +LP++ PP +  L 
Sbjct: 62  NTLSTSFFGMLISLAIG-GA------FALSLTLCDIRGKSILSFLFMLPMMIPPQVTALS 114

Query: 255 VTLMLGRSGYITELMVDGFGLQKTNWLYGFTGIWLAQVLAFAPMSFMILDGALKSLHPSL 314
              M G S  + + +     +     LY   GI L   +  AP+ ++ L   L +L    
Sbjct: 115 WIGMTGPSSTLLKAIGLAPAMGSPQPLYSIAGIALLLGVQHAPLVYLSLRAGLLALPQDG 174

Query: 315 EEASYTLKANRYQTFFGIIMPLLKPALANSFLIIFVQSLADFSNPLVLG--GSFDVLATQ 372
            EA+    A+  +  F II+PL  P L     I FV ++ +F  P +LG  GS   L T 
Sbjct: 175 IEAAKLSGASPRRVLFDIILPLSTPGLIAGAAISFVSNVGNFGIPAILGIPGSIFTLPTL 234

Query: 373 IYFYIAG-AQLDYASASTLGSVLLLFSLAIFVVQYLWIGQRSY--VTISGKAYRGDVQEM 429
           IY   A      +   + L +++ + S+A   +Q   +  R Y  + +SGKA        
Sbjct: 235 IYSRFASFGTSTFGDIAILSTMIAIISVAGLALQERAMKGRDYRIIGLSGKA-------- 286

Query: 430 PASLKLG---VTVTLYAWMIFNVLLYG---SIFFGSFTVNWGVDYTL---TFKNYLNLFG 480
            A+  LG   V   L  W++   +L     ++   S    +GV  +L   T   Y  L  
Sbjct: 287 -ATFGLGRWRVPAELALWLVLLFMLVAPLTALVASSLAPAYGVPLSLKTATLHAYEELL- 344

Query: 481 NGMSDGAWPSLITTMIYAGVAAPITAL-FGLLIAYVVVRQQFYGKKVIEFSTMLCFAVPG 539
                    +     ++   A  +  L   +L AY +VR +     ++     + +A+PG
Sbjct: 345 --YRQSVTRTAFRNSLFLATATSLCLLAVTVLTAYFLVRGKSRFMFLLSALVDIPYALPG 402

Query: 540 TVAGVSYILAFNDAPIYLTG-----TAAIVVISMVMRNVPVGIRSGIAGLGQLDKSLDEA 594
            V  VS++L F  API L G     T  I++++       V ++  ++   Q D SL+EA
Sbjct: 403 VVISVSFVLLFA-APIPLLGVTLYGTIWIILLAYFSSFFAVSLKPMVSAFLQFDPSLEEA 461

Query: 595 SLSLRASSLQTIRYIILPLLRPAILSTLVYSFVRAMTTVSAIIFLVTPETRVATSYILNR 654
           +    A   + ++ IILPL+ PA  ++++  F+ A   ++    L +  T+     I N 
Sbjct: 462 ARLSGAGFWRRLKDIILPLVGPAAGASVILVFLIACNELTVSALLWSAGTQTLGVLIYNL 521

Query: 655 VEDGEYGIAIAYGSVLIVVMLAIILLFDLLVG 686
            + G + +A A  SVL+V+M+ I++L   ++G
Sbjct: 522 DDSGSFDLASAL-SVLVVIMVIILMLLLEILG 552



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 25/220 (11%)

Query: 485 DGAWPSLITTMIYAGVAAPITALFGLLIAYVVVRQQFYGKKVIEFSTMLCFAVPGTVAGV 544
           D A  +L T+     ++  I   F L +    +R    GK ++ F  ML   +P  V  +
Sbjct: 58  DAAQNTLSTSFFGMLISLAIGGAFALSLTLCDIR----GKSILSFLFMLPMMIPPQVTAL 113

Query: 545 SYI-----------------LAFNDAPIYLTGTAAIVVISMVMRNVPVGIRSGIAGLGQL 587
           S+I                    +  P+Y   + A + + + +++ P+   S  AGL  L
Sbjct: 114 SWIGMTGPSSTLLKAIGLAPAMGSPQPLY---SIAGIALLLGVQHAPLVYLSLRAGLLAL 170

Query: 588 DKSLDEASLSLRASSLQTIRYIILPLLRPAILSTLVYSFVRAMTTVSAIIFLVTPETRVA 647
            +   EA+    AS  + +  IILPL  P +++    SFV  +        L  P + + 
Sbjct: 171 PQDGIEAAKLSGASPRRVLFDIILPLSTPGLIAGAAISFVSNVGNFGIPAILGIPGS-IF 229

Query: 648 TSYILNRVEDGEYGIAIAYGSVLIVVMLAIILLFDLLVGE 687
           T   L       +G +      ++  M+AII +  L + E
Sbjct: 230 TLPTLIYSRFASFGTSTFGDIAILSTMIAIISVAGLALQE 269