Pairwise Alignments

Query, 431 a.a., HDIG domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., Cyclic di-GMP phosphodiesterase response regulator RpfG from Alteromonas macleodii MIT1002

 Score =  109 bits (273), Expect = 1e-28
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 1/175 (0%)

Query: 239 AMLMANVVDAKSQFTFQHSQKVAELCQHLAKELGLNVEMQKALYLTGLVHDIGKLHTPEE 298
           A+L    +  K  +  +HS  VA L  +  K LG++ E  + L   G +HD+GK+  P+E
Sbjct: 142 ALLCLTKIREKDDYLLEHSLNVAILLANFGKYLGMSEEEVQDLSYAGFLHDLGKIKIPDE 201

Query: 299 ILHKPGKLNESEYLCIQRHSTDSRYTLQMVFGQSVVCEWAGNHHERLDGSGYPRGLQGAA 358
           ILHKPG+L +SE   ++ H       L+       + +    HHERLDG GYP G++G  
Sbjct: 202 ILHKPGRLTDSEMEIMKGHVKHGVDYLKSTEIAQPLIQAISEHHERLDGLGYPAGIKGED 261

Query: 359 IDLPSRIIAIADVFQALTQARPYRGSMSLNEVMNIMRHEVSCGRLDSQVFDVIVR 413
           I    R++AIAD++ ALT  R Y+  MS  +  +I+  +    RLD  +    ++
Sbjct: 262 ISQAGRMLAIADMYDALTADRVYKAGMSSQKAFSILMSDAPT-RLDQSLVQQFIK 315



 Score = 28.1 bits (61), Expect = 5e-04
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 24  AFFCIARALDSVGVDD--INHGHRVGYMAYSCAQAMEWSEEECQLVFALGLIHDCGVAQK 81
           A  C+ +  +    DD  + H   V  +  +  + +  SEEE Q +   G +HD G  + 
Sbjct: 142 ALLCLTKIREK---DDYLLEHSLNVAILLANFGKYLGMSEEEVQDLSYAGFLHDLGKIKI 198

Query: 82  RDFY----RLLENMQPDNTQQHCVRGNELLSNCPPLAPFADAILYHHTPWDEL 130
            D        L + + +  + H   G + L +     P   AI  HH   D L
Sbjct: 199 PDEILHKPGRLTDSEMEIMKGHVKHGVDYLKSTEIAQPLIQAISEHHERLDGL 251