Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1324 a.a., Nitrate reductase (EC 1.7.99.4) (from data) from Pseudomonas simiae WCS417

 Score =  300 bits (768), Expect = 4e-85
 Identities = 224/795 (28%), Positives = 356/795 (44%), Gaps = 110/795 (13%)

Query: 45  KAPCRFCGTGCSVLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLL 104
           ++ C +CG GC +++  ++ +VV   GD   P N G  C KG    + +    R++   +
Sbjct: 7   RSVCPYCGVGCGIVMQVENNKVVKVIGDTAHPTNFGRLCTKGTTCGQAIADSGRMENAYV 66

Query: 105 RMKDGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKL 164
           R       ++ +   +  D A    A + +  L T GP ++  + SGQ ++   Y   KL
Sbjct: 67  RQA-----REHDPVRIGIDKAISETARRLRHILDTHGPQALAFYVSGQMSLEAQYLINKL 121

Query: 165 MKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPV 224
            K   R+++I+ N+R CMASA  G+  + G D P G Y+DF+ AD F + G+NMA+ HP+
Sbjct: 122 AKGFVRTHHIESNSRLCMASAGSGYKLSLGADGPPGSYEDFDRADLFFVIGANMADCHPI 181

Query: 225 LWTRITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVN 284
           L+ R+ DR  +    K+ V+    + + + A+      P +DLA+ N + + +++N   +
Sbjct: 182 LFLRMMDRVKAG--AKLIVVDPRRNATADKANLFLPIKPGTDLALLNGLLHLLVKNGHTD 239

Query: 285 WDFVNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKAS 344
             F+        A TD                           +E     +  Y+ E  +
Sbjct: 240 PAFI-------AAFTD--------------------------GWEAMPAFLEDYSPEHVA 266

Query: 345 EISGVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGN 404
            I+G++ +  I  A  +     + MS WTMG+NQ T G W  + + NLHL TG I  PG+
Sbjct: 267 VITGLA-EADIRQAADWIGQAAEWMSCWTMGLNQSTHGTWNTNALCNLHLATGAICRPGS 325

Query: 405 SPFSLTGQPSACGTAREVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAV 464
            PFSLTGQP+A G  RE+G     LP    V     RA  E +W++P  ++P + G   V
Sbjct: 326 GPFSLTGQPNAMG-GREMGYMGPGLPGQRSVLVEADRAFIEDLWQIPPDSLPRQAGAGTV 384

Query: 465 QQDRMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAY-PTVTAQAADL 523
                +  G +   W+ C N + + PN  +  + G +  E  ++  DA+  T T + AD+
Sbjct: 385 GMFEQMAAGQIKACWIICTNPVASVPN-RQTVIKGLQTAE-LVITQDAFLDTETNRYADI 442

Query: 524 VLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELLA 583
           +LP A+W E EG   N+ER   +  + V   GE+  D WQ+I                  
Sbjct: 443 LLPGALWAEAEGVMINSERNLTLMQKAVDAPGETLPD-WQIIA----------------- 484

Query: 584 KAPQYRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQKGLFEEYAE-FGRGHGH 642
                       V  + G  + F  + A E               +FEE    +    G+
Sbjct: 485 -----------RVASEMGFAEAFTYASASE---------------VFEEIKRAWNPKTGY 518

Query: 643 DLAPYDVYHQVRGLRWPVVDGKETKWRFKEGS----DPYAKAGSGWDFYGKPDGKAWIIS 698
           D         +RG  +P +  K  +W     +    +P      G   +   +GKA  ++
Sbjct: 519 D---------IRGASYPRLREKPLQWPCASDTAADRNPIRYVDKGPVTFATDNGKAQFLA 569

Query: 699 SPYEAPPEMPNEEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGL 758
            P+  P E+P+E +   L TGRV   WHT T T +V  L K  P     +H EDA   G+
Sbjct: 570 RPHMPPAELPDEAFPFVLNTGRVQHQWHTLTKTGKVATLNKLNPGPFVELHAEDAARLGI 629

Query: 759 RRGDEVLISNSRGEVRVRVETRGRNKPPKGLVFVPF-----FDARILVNKLILDATDPLS 813
           +  D V I + RG   +      R +P  G  F PF     F   + +N +  DA DP+S
Sbjct: 630 KDKDRVEIRSRRGHAVLPAVITDRVRP--GNCFAPFHWNDVFGDNLAINAVTNDAVDPIS 687

Query: 814 KQTDFKKCPVKITKV 828
            Q +FK C V + +V
Sbjct: 688 LQPEFKCCAVALARV 702