Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 851 a.a., nitrate reductase from Magnetospirillum magneticum AMB-1

 Score =  162 bits (409), Expect = 1e-43
 Identities = 142/499 (28%), Positives = 208/499 (41%), Gaps = 79/499 (15%)

Query: 341 EKASEISGVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIA 400
           E+A    GV  ++++     +A+   K +++W+ G+NQ + G      + N HL TG+I 
Sbjct: 231 EEAQVEVGVPLEQIVQFFSWFAETE-KTVTVWSQGINQSSSGTDKVDAIINCHLQTGRIG 289

Query: 401 TPGNSPFSLTGQPSACGTAREVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPG 460
            PG  PFSLTGQP+A G  REVG  A+ L A M         +  + W      +  KPG
Sbjct: 290 RPGMGPFSLTGQPNAMG-GREVGGLANMLAAHMGFDEANVDRVG-RFW--ASERVAAKPG 345

Query: 461 FHAVQQDRMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDA-YPTVTAQ 519
             AV   + + +  +   WV C N   + P  +  R      P  F+VVS+    T TA+
Sbjct: 346 LKAVDMFKAVAESKIKALWVMCTNPAVSMPEADLVRAAIAACP--FVVVSECEADTDTAR 403

Query: 520 AADLVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPE 579
            A + LP   W EKEG   N+ERR       + T GE+  D W                 
Sbjct: 404 LAHVRLPALTWGEKEGTVTNSERRISRQRPFLPTPGEAKGDWW----------------- 446

Query: 580 ELLAKAPQYRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQKGLFEEYAEFGRG 639
            ++A+  Q  G                   EA         F +     +F+E+      
Sbjct: 447 -IMAQVAQRMG-----------------FGEA---------FAWTDTGAIFDEFCRLTAF 479

Query: 640 HGHDLAPYDV-------YHQVRGLRWPVVD-GKETKWRFKEGSDPYAKAGSGWDFYGKPD 691
             H     D+       Y  +  ++WPV + GK T   F +G            FY  PD
Sbjct: 480 ENHGARDLDLSGLVGADYESIEPIQWPVREPGKGTARLFADGR-----------FY-HPD 527

Query: 692 GKAWIISSPYEAPPEMPNEEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHE 751
           GKA ++ +P   P    +E + L L TGR+ + WHT T T R   L    P+ +  +H  
Sbjct: 528 GKARMVDTPPRPPARATDEAFPLILNTGRMRDQWHTMTRTGRAARLAAHAPEPVLQVHPR 587

Query: 752 DAQARGLRRGDEVLISNSRGEVRVRVETRGRNKPPKGLVFVPFF-----DARILVNKLIL 806
           DA    L  G    +S  R  V +R+      +P  G VF P        +  +V  LI 
Sbjct: 588 DAIRFRLADGGLAKVSGRRASVVLRIAFDNGQRP--GEVFAPIHWNDRTSSGAVVGTLID 645

Query: 807 DATDPLSKQTDFKKCPVKI 825
            ATDP+S Q + K+ PV +
Sbjct: 646 AATDPVSGQPELKQAPVMV 664



 Score =  144 bits (362), Expect = 3e-38
 Identities = 86/239 (35%), Positives = 123/239 (51%), Gaps = 12/239 (5%)

Query: 45  KAPCRFCGTGCSVLVGTQDGRVV-ATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPL 103
           +  C +CG GC V+    D       +GDPE P N G  C+KG  L++ +    RL  P+
Sbjct: 6   RTTCPYCGVGCGVIAARLDDSAQWVVRGDPEHPANFGRLCVKGSSLAETLDLDGRLLHPM 65

Query: 104 LRMKDGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVK 163
           +          GE T V+W+ A D++AEK+ A++   GP SV  + SGQ    + Y A K
Sbjct: 66  I----------GEQT-VAWEPALDLVAEKFTAAIAEHGPDSVAFYVSGQLLTEDYYVANK 114

Query: 164 LMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHP 223
           LMK    S NID N+R CM+S V G +R FG D   GCY+D + AD  VL GSN A  HP
Sbjct: 115 LMKGFIGSGNIDTNSRLCMSSTVAGHVRAFGSDTVPGCYEDLDLADLVVLVGSNTAWCHP 174

Query: 224 VLWTRITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDA 282
           V + RI   +   P +++ V+      + E AD      P +D  + N +  ++   +A
Sbjct: 175 VAFQRILAAKARRPDMRIVVVDPRRTATAECADLHLAIRPGTDAILFNGLLAHLRGEEA 233