Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Ribose operon repressor from Variovorax sp. SCN45

 Score =  120 bits (300), Expect = 7e-32
 Identities = 86/338 (25%), Positives = 162/338 (47%), Gaps = 14/338 (4%)

Query: 16  TSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLI 75
           T KDVA  A VS +TVS V      VS K +++V  A + L Y PNA ARSL +N +  +
Sbjct: 3   TIKDVALQAEVSVTTVSHVVNDTRHVSAKVRERVELAIRELGYVPNAMARSLKSNTTSTL 62

Query: 76  GLVFPDADYPIHMKTLQLISSELQQVGYSAVLIPWQVDEQDNHSI--PNIFQYRVDG--V 131
           G++ P++  P   + ++++       GY+ VL     DE    S+    + + R+DG  V
Sbjct: 63  GMLIPNSSNPYFAEIVRIVEDRCFGAGYTLVLCNTD-DEPHRQSVYLQVLAERRIDGLIV 121

Query: 132 IAASATFNKTLYEECEEFNIPIVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQSA 191
           +      +  L ++     +P V   R +       V + + + G  A + L   G +  
Sbjct: 122 VLTGTGDDDALVKQLHGLRVPTVLVDREIADPACDLVETAHMQGGLLAVRHLLSLGHKRI 181

Query: 192 VYLTGEVPTFTNDERQQGFCSEFKSLTGFTPPVV-------KATYDYTGSLDTIRRLIAD 244
             + G+     +++R +G+        G TP +        +  +   G  + +  ++  
Sbjct: 182 ACIGGQAGVMPSEQRIEGWRMALAE-AGATPDIANGDALLWRGGFTSQGGYEAMHAILRT 240

Query: 245 SSRPAAIFCATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFK 304
             +P+A+F   D +A+  +  A  E  +R+PDD+ ++GFD+I  + + S  LTT AQ  +
Sbjct: 241 ERKPSAVFVCNDLMAIGALRAAH-ESGVRVPDDLSIVGFDDIELSAYTSPPLTTVAQPKE 299

Query: 305 RLARESVKIIVDQITTRNQSLVKLMVPTKLIQRKSTLK 342
           R+   +V ++++Q+  + +   K+++  +L  R ST +
Sbjct: 300 RIGAMAVDMLLEQMGGKRRDARKVVLQPELRVRASTAR 337