Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  123 bits (309), Expect = 6e-33
 Identities = 91/328 (27%), Positives = 151/328 (46%), Gaps = 4/328 (1%)

Query: 16  TSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLI 75
           T KDVA LAG+S +TVS V      VSE+ + KV  A   L+Y P+A ARSL    +  I
Sbjct: 3   TIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTATI 62

Query: 76  GLVFPDADYPIHMKTLQLISSELQQVGYSAVLIPWQVDEQDNHS-IPNIFQYRVDGVIAA 134
           GL+ P++  P   +  + I    ++ GY  +L     + Q   S +  + + R+DG++ A
Sbjct: 63  GLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVVA 122

Query: 135 SATFNKTLYEECEEFNIPIVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQSAVYL 194
           S   +  L +       P+V   R +EG  +  V  D+ +    A + L + G +   Y+
Sbjct: 123 SVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVAYI 182

Query: 195 TGEVPTFTNDERQQGFCSEFKSLTGFTPPVVKATYDYTG-SLDTIRRLIADSSRPAAIFC 253
            G   T     R  GF           P       D+T          + +  RP+AIF 
Sbjct: 183 GGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGKRPSAIFA 242

Query: 254 ATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLARESVKI 313
             D +   V+  A  E ++ +P ++ VIGFD+I  + ++   LTT  Q  + L   +  +
Sbjct: 243 GNDMIGFGVLRAAA-ERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGESAASL 301

Query: 314 IVDQITTRNQSLV-KLMVPTKLIQRKST 340
           ++ +I T  Q    + +V  +++ R+ST
Sbjct: 302 LLTRIATPRQGAAEQRIVAPRIVLREST 329