Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., DNA-binding transcriptional repressor of ribose metabolism (NCBI) from Escherichia coli BW25113

 Score =  135 bits (339), Expect = 2e-36
 Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 7/329 (2%)

Query: 16  TSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLI 75
           T KDVA+LAGVS STVS V      VSE    KV  A K LNY P+A ARSL  N++  I
Sbjct: 3   TMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTI 62

Query: 76  GLVFPDADYPIHMKTLQLISSELQQVGYSAVLIPWQVDEQD-NHSIPNIFQYRVDGVIAA 134
           G++   +  P + + ++ +     + GYS VL   + DEQ  N ++  + Q RVDG++  
Sbjct: 63  GMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLL 122

Query: 135 SATFNKTLYEECEEF-NIPIVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQSAVY 193
               ++   E  + +  +P V          S  +  ++   G  A Q L   G      
Sbjct: 123 CTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRIAC 182

Query: 194 LTGEVPTFTNDERQQGFCSEFKSLTGFTPP---VVKATYDYTGSLDTIRRLIADSSRPAA 250
           +TG +       R +G+ +  K   G   P    V   +++ G  D +R+L++   RP A
Sbjct: 183 ITGPLDKTPARLRLEGYRAAMKR-AGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQA 241

Query: 251 IFCATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLARES 310
           +F   D +A+ V   A ++  L++P DI VIG+D+I    +++  LTT  Q    L   +
Sbjct: 242 VFTGNDAMAVGVYQ-ALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA 300

Query: 311 VKIIVDQITTRNQSLVKLMVPTKLIQRKS 339
           + +++ +IT       +L +   L++R S
Sbjct: 301 IDVLIHRITQPTLQQQRLQLTPILMERGS 329