Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) from Escherichia coli BW25113

 Score =  136 bits (343), Expect = 7e-37
 Identities = 93/329 (28%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 16  TSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTNESKLI 75
           T KDVAK A VS +TVS V      V+E+T+  V+ A K L+Y P+A ARSL  N +K I
Sbjct: 3   TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSI 62

Query: 76  GLVFPDADYPIHMKTLQLISSELQQVGYSAVL-IPWQVDEQDNHSIPNIFQYRVDGVIAA 134
           GL+   ++     + ++ +     Q GY+ +L   W   E+    +  + Q RVDG++  
Sbjct: 63  GLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVM 122

Query: 135 SATFNKTLYEECEEF-NIP-IVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQSAV 192
            + + + L    EE+ +IP +V      +   +  VI + +E G  A + L + G +   
Sbjct: 123 CSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIG 182

Query: 193 YLTGEVPTFTNDERQQGFCSEFKSLTGFTPP--VVKATYDYTGSLDTIRRLIADSSRPAA 250
            + G +   T   R  GF    +      P   +V+  ++       ++++++   RP A
Sbjct: 183 VIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTA 242

Query: 251 IFCATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLARES 310
           +FC  D +AM  +  A  E  LR+P D+ +IG+DN+    + +  LTT  Q    L   +
Sbjct: 243 VFCGGDIMAMGAL-CAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETA 301

Query: 311 VKIIVDQITTRNQSLVKLMVPTKLIQRKS 339
             +++D+I  + +    + V  +LI+R+S
Sbjct: 302 FNMLLDRIVNKREEPQSIEVHPRLIERRS 330