Pairwise Alignments

Query, 343 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., DNA-binding transcriptional regulator CytR from Escherichia coli ECRC62

 Score =  112 bits (279), Expect = 2e-29
 Identities = 83/333 (24%), Positives = 154/333 (46%), Gaps = 4/333 (1%)

Query: 11  EKATVTSKDVAKLAGVSQSTVSRVFVPGSSVSEKTKQKVFEAAKVLNYRPNAFARSLTTN 70
           ++   T KDVA  A VS +TVSR  +    VS+ T+ +V +AA+ + Y P    R++  N
Sbjct: 6   QETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRN 65

Query: 71  ESKLIGLVFPDADYPIHMKTLQLISSELQQVGYSAVLIPW-QVDEQDNHSIPNIFQYRVD 129
           ES+ I ++ PD   P   + ++ I       GY  ++      ++Q+   I  I   ++D
Sbjct: 66  ESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQID 125

Query: 130 GVIAASATFNKTLYEECEEFNIPIVQYARVVEGTKSSYVISDNYEAGRQAAQLLHQAGAQ 189
           G++   +        E +    P+V         +   V  DN  A   A   L++ G +
Sbjct: 126 GMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAVNYLYEQGHK 185

Query: 190 SAVYLTGEVPTFTNDERQQGFCSEFKSLTGFTPP--VVKATYDYTGSLDTIRRLIADSSR 247
               + G         R QG+    +       P  + +  + +      +++L+     
Sbjct: 186 RIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLLDLPQP 245

Query: 248 PAAIFCATDNLAMAVMDIARFEFSLRIPDDIQVIGFDNIPQTEWLSYQLTTFAQDFKRLA 307
           P A+FC +D +A+  +  A+ +  L++P+D+ +IGFDNI  T++    LTT AQ    + 
Sbjct: 246 PTAVFCHSDVMALGALSQAKRQ-GLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIG 304

Query: 308 RESVKIIVDQITTRNQSLVKLMVPTKLIQRKST 340
           RE++ +++DQ+  ++      ++  +LI R ST
Sbjct: 305 REAMLLLLDQMQGQHVGSGSRLMDCELIIRGST 337