Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  171 bits (433), Expect = 6e-47
 Identities = 107/370 (28%), Positives = 198/370 (53%), Gaps = 4/370 (1%)

Query: 214 AFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQVSQLLLVIQRIAQS 273
           A++ +L+Q  +++        L + +A++    L+I    R +  Q++ L  V+  + ++
Sbjct: 127 AYAPSLSQVFEERFANYAVAVLILMLAMLGASQLLI----RFLLSQLNTLKDVMLHVEKT 182

Query: 274 NDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQ 333
            D+S R  L   DE+  +A  FN++   ++ ++++    + QL    + +   + +V   
Sbjct: 183 GDLSARVPLACKDEVGQMASAFNAMQAGYQRVVNTVAHTARQLDDGAARLASSMNEVQHG 242

Query: 334 FNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLL 393
              Q       AT++ +M +T+  I++      D    A   A  G+ VV    ++I  L
Sbjct: 243 MLGQQSETDQAATAINEMTATVHHIAQHAGATRDLSQTADTLAGSGQEVVTRVQRSIAGL 302

Query: 394 SSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 453
           S+ +Q++   I  L    +KI G VS+I  IAEQTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 303 STGVQQTAVMIQKLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVA 362

Query: 454 DEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQIL 513
           DEVR+LA R   ST+EITR+VS +Q+     VD +   + +  + +  +++   +L +I 
Sbjct: 363 DEVRNLAKRVQSSTDEITRMVSALQAGTRDAVDFMQESSFKADDCVHQAQEAGAALAEIT 422

Query: 514 RDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAH 573
             +  +++++ +IA A E+Q  V   ++ ++  +  ++EN ++      T  + ++  A 
Sbjct: 423 GAVAQMRESNTQIAVAAEQQSHVAEEMNRAVVSIRDVTENTVQQTVDSATTSNQLATLAG 482

Query: 574 AMDEAVAEFR 583
            + +A+ + +
Sbjct: 483 ELSKAIGQLK 492