Pairwise Alignments
Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Score = 181 bits (458), Expect = 1e-49
Identities = 150/561 (26%), Positives = 264/561 (47%), Gaps = 34/561 (6%)
Query: 27 QFAQTNDELNRAINQVDKLEVRLLNLRRNEKDFLLRSDAKYLDTFQKNTDLFLNLQTELD 86
Q + E A+ Q KLE+ + L DT+Q DL L +
Sbjct: 128 QVLTQHSEWVNALAQRRKLEIAFIRLE---------------DTYQWAADLLLQQSSGQR 172
Query: 87 AIMLKYELGDSNALRTDLLEYKQGFEQLVRAYQTLGLNPESGLWKSYYQALEQAKQQASA 146
++ K EL S R + + RA LN L K + +E A+++
Sbjct: 173 SMRNKAELITSGIARD--------LKNIRRADAKTDLNE---LEKVLSKDIEMARKRL-- 219
Query: 147 EELLALVDFHQQVLAGSANSSAL----NQFSDLIKSAQAVVNQAKVIGLKYNEGLLGATR 202
+ +L D + +A L N ++ AQ + N A +I + + L ++
Sbjct: 220 DRVLVPDDVKARYIANLNRLQELALGQNGLLATMRKAQQLEN-ALLIQNQQVDASLASSL 278
Query: 203 SHSHDVEEMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQVSQ 262
+ D+ + + ++ D + ++V+ + L++ + +RSI + +
Sbjct: 279 AKLDDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQK 338
Query: 263 LLLVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSS 322
+ + +A+ D++ R E A++R + L DK L+S S L + S
Sbjct: 339 INHELAYMARG-DMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASR 397
Query: 323 MHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSV 382
+ E+ + + Q +A ++ ++ + +E++ ST+ A D V++A A+QGR
Sbjct: 398 SAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQK 457
Query: 383 VVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARA 442
V TT + + L+S ++ + L F IG + +I+GIAEQTNLLALNAAIEAARA
Sbjct: 458 VATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARA 517
Query: 443 GEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSAS 502
G+ GRGFAVVADEVR+LATRT STEEI ++ N+Q QVV+ + Q + + +
Sbjct: 518 GDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQT 577
Query: 503 RQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCL 562
R++D +LQ I M I++ + ++A A +EQ V V+ + + ++ R A++
Sbjct: 578 REMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESA 637
Query: 563 TEVDTVSRQAHAMDEAVAEFR 583
+ + ++ A + +A F+
Sbjct: 638 SSSEVLADLAAKQQQLIAHFK 658
Score = 33.1 bits (74), Expect = 4e-05
Identities = 81/471 (17%), Positives = 187/471 (39%), Gaps = 65/471 (13%)
Query: 126 ESGLWKSYYQALEQAKQQASA-----EELLALVDFHQQVLAGSANSSALNQFSDLIKSAQ 180
ES W ++ E+A + ++ QQ+ A + ++ + QF D++++
Sbjct: 61 ESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATN 120
Query: 181 AVVNQAKVIGLKYNEGLLGATRSHSHDV-----EEMFKAFSKTLTQAVDDKQKTMTTTKL 235
+QA + +++E + + ++ E+ ++ + L Q Q++M
Sbjct: 121 QFYSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQ-SSGQRSMRNKAE 179
Query: 236 SVTIAVVLIILLV--------IFQISRSINLQVSQLLLVIQRIAQSNDISLRAELKGNDE 287
+T + + + + ++ + ++ + + R+ +D+ R + +
Sbjct: 180 LITSGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKAR-YIANLNR 238
Query: 288 ITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATS 347
+ +A N LL ++ K+ QL ++ + +++ + + + M A S
Sbjct: 239 LQELALGQNGLL--------ATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGS 290
Query: 348 VQQMVSTISEIS-ESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSI-- 404
+ Q +++ + S N + V +A +A + TT ++I LQK H +
Sbjct: 291 IAQQSRMLADAAVSSANFWIMAV--SAISAAVALVIGYTTARSI---QKPLQKINHELAY 345
Query: 405 ---GSLNAFVE-----KIGGAVSIIQGIAEQTN--LLALNAAI-----EAARAGE-QGRG 448
G + + + G I +A++T L +NA EA+R+ E R
Sbjct: 346 MARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERA 405
Query: 449 FAVV------ADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSAS 502
A V D+V + T S E+ R + + VD D QG++ ++ +
Sbjct: 406 MARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDE----VDRADAEAKQGRQKVATT 461
Query: 503 RQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISEN 553
R++ E Q+ DM + + ++ GS+++ + + N ++ N
Sbjct: 462 RRITE---QLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALN 509