Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  190 bits (483), Expect = 1e-52
 Identities = 154/582 (26%), Positives = 278/582 (47%), Gaps = 43/582 (7%)

Query: 26  SQFAQTNDELNRAINQVDKLEVRLLN---LRRNEKDFLLRSDAKYLDTFQKNTDLFLNLQ 82
           SQ +  + EL + I ++ +LE R  +   L  +    +  + A    + QK+T  F  L 
Sbjct: 109 SQASVNHPELAQPITELKQLETRYFSEADLAMDNYQAMFAAQA----SVQKSTREFQRLH 164

Query: 83  TEL-----------DAIMLKY-------ELGDSNALRTDLLEYKQGFEQLVRAYQTLGLN 124
           +EL           D+I +K        +L D+  + +D L        +    + +  N
Sbjct: 165 SELSVGMKEFVDDNDSISVKVMAKSYFIKLKDAEVITSDAL----ASSDVAFVEKAVNQN 220

Query: 125 PESGLWKSY-YQALEQAKQQASAEELLALVDFHQQVLAGSANSSALNQFSDLIKSAQAVV 183
            ++    +Y Y+ L     Q        +  F Q +         L+Q ++ +++  A+ 
Sbjct: 221 KKAVTHLNYAYRGLTTQMPQLKERFDEPVAKFTQDI---GQKGGVLDQHNEYLQARAALY 277

Query: 184 NQAKVIGLKYNEGL--LGATRSHSHDVEEMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAV 241
           N    +  + ++ +  LGA    + D        +++L +A    Q+      + + IAV
Sbjct: 278 NNIANLANEVDKAMTILGAFNQTATD------DLNQSLAEAGSVYQQGAIKAVV-IGIAV 330

Query: 242 VLIILLVIFQISRSINLQVSQLLLVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDK 301
           VL+   + + I+ S+   V+++L  ++ + Q N ++ R E++ N+E + ++R+ NSL D 
Sbjct: 331 VLLATAIGYHIAHSVREPVTRILKTLESLTQGN-MTQRIEIRYNNEFSRLSRHINSLADN 389

Query: 302 FEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISES 361
              ++    + S  L ++ S+          + N Q E    +A ++ +M  ++ E++ S
Sbjct: 390 LHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANS 449

Query: 362 TNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSII 421
              ++  V Q    +E GR ++ T +  I  L + L +S  ++G L     +IG  + +I
Sbjct: 450 AQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVI 509

Query: 422 QGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQM 481
           + IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT QST EI  ++SN+QS  
Sbjct: 510 RNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSS 569

Query: 482 SQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVS 541
           S     I+ C    + ++  +   + ++++I   +  I   S  I+ A  EQ      ++
Sbjct: 570 SLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIA 629

Query: 542 ESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
            SI ++N IS+ + ++  Q       ++  A+   E V  F+
Sbjct: 630 RSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFK 671