Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  185 bits (469), Expect = 6e-51
 Identities = 118/374 (31%), Positives = 194/374 (51%), Gaps = 4/374 (1%)

Query: 210 EMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQVSQLLLVIQR 269
           +M  A    +  A   + KT+ T     T+  + + LL  + I+R I + + Q L   +R
Sbjct: 268 QMMTASQTEVRDAAAAQAKTLLTV---ATVLALALGLLAAWAITRQIIIPLRQTLRAAER 324

Query: 270 IAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQ 329
           +A S D++   +++  DE+  +    + +      LI        Q+ S+   +    EQ
Sbjct: 325 VA-SGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQ 383

Query: 330 VIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKN 389
                N Q      +AT++ QM +T+ E++ +   A +    A + A +G  VV   V  
Sbjct: 384 TSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQ 443

Query: 390 IDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGF 449
           I+ L+S +  S  ++  L    +KIG  + +I+ +A+QTNLLALNAAIEAARAGE GRGF
Sbjct: 444 IERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGF 503

Query: 450 AVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESL 509
           AVVADEVRSLA RT QSTEEI  +++ +QS   +V   +D        ++  +R+   SL
Sbjct: 504 AVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSL 563

Query: 510 QQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVS 569
           + I R + +IQ  +Q+IA A EEQ +V   ++ S+  +  IS+    ++++  +    ++
Sbjct: 564 ETITRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTSAASEETASSSVELA 623

Query: 570 RQAHAMDEAVAEFR 583
           R    +   V  FR
Sbjct: 624 RLGTHLQGLVGRFR 637



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 61/315 (19%), Positives = 113/315 (35%), Gaps = 54/315 (17%)

Query: 324 HDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVV 383
           H  LEQ  E   +  +    +  + Q+  ++   +  S + AVD + +  R+  QG +  
Sbjct: 106 HQRLEQQREAVRIYQQAFNELKQADQRREASRDVLGSSADKAVDLIGRVQRSLLQGAN-- 163

Query: 384 VTTVKNIDLLSSTLQKSQHSIG----SLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEA 439
           +   ++   +S+ LQ+++  +     S NA  ++     +I Q +AE   L A   A  A
Sbjct: 164 INQYQHAVDVSALLQQARFQVRGYTYSGNADYQQT-ALKAIDQALAELRALPAKVPAEHA 222

Query: 440 ARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVV--SNIQSQMSQVV-----DDIDLCN 492
           A   +         D V         S + + R+V    +  Q SQ++     +  D   
Sbjct: 223 ASLDDAATAMGGYRDAVTQFGNAQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAA 282

Query: 493 NQGQETLS-----------------------------------ASRQLDESLQQILRD-M 516
            Q +  L+                                   AS  L +SLQ   RD +
Sbjct: 283 AQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQTLRAAERVASGDLTQSLQVQRRDEL 342

Query: 517 HTIQDNSQRIAAAIEEQ----GSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQA 572
             +Q +  R+   + E     G  +  ++ +  EL+ ++E           E D V+   
Sbjct: 343 GQLQASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAM 402

Query: 573 HAMDEAVAEFRTNRD 587
           + M   V E   N +
Sbjct: 403 NQMTATVHEVARNAE 417