Pairwise Alignments

Query, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  186 bits (472), Expect = 2e-51
 Identities = 110/348 (31%), Positives = 191/348 (54%), Gaps = 1/348 (0%)

Query: 237 VTIAVVLIILLVIFQISRSINLQVSQLLLVIQRIAQS-NDISLRAELKGNDEITAVARYF 295
           V + + L++ LV+  I+RSI   + + +  +  IA   +D++ R +  G+DEIT +  +F
Sbjct: 196 VGVGIALLMALVVMLIARSIARPLQEAVQAMGNIASGESDLTRRLDTHGSDEITHLGEHF 255

Query: 296 NSLLDKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTI 355
           N    K + ++   Q  +H L  S   + D      ++   QS  M  +AT+V ++   +
Sbjct: 256 NRFNGKLQGVVGQLQGAAHALAQSAGHVGDNAGAAQQRSAQQSLQMDQVATAVNEVTYAV 315

Query: 356 SEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIG 415
            +++++   A   +  A +    G+  +  ++  ID LS T+ ++   I  L     +IG
Sbjct: 316 QDVAKTAEQAAGEMRTAQQQVTHGQQAIHGSLAQIDRLSLTIDEAVQVIRDLAGHSTRIG 375

Query: 416 GAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVS 475
           G + +I+ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT QST EI  ++ 
Sbjct: 376 GVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTAQSTAEIHTMIE 435

Query: 476 NIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGS 535
           ++QSQ    V  ID  +   ++T+  +R+   SL  I + ++ +   +  IA+A  +Q  
Sbjct: 436 HLQSQSDAAVKAIDTSSEASRQTVEQAREAGASLDAINQVLNNLTALNASIASATLQQSH 495

Query: 536 VMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
           V+  ++ ++ +   +S+    +A+Q       + R +  +++ + +FR
Sbjct: 496 VVEEINRNVLDTAGLSQQTADAARQSSDAGVALGRLSEELEQLLRQFR 543



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 37/216 (17%)

Query: 408 NAFVEKIGGAVSIIQG----IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRT 463
           N F  K+ G V  +QG    +A+    +  NA     R+ +Q      VA  V  +    
Sbjct: 256 NRFNGKLQGVVGQLQGAAHALAQSAGHVGDNAGAAQQRSAQQSLQMDQVATAVNEVTYAV 315

Query: 464 HQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDM--HTI-- 519
               +   +    +++   QV       +    +    S  +DE++Q ++RD+  H+   
Sbjct: 316 QDVAKTAEQAAGEMRTAQQQVTHGQQAIHGSLAQIDRLSLTIDEAVQ-VIRDLAGHSTRI 374

Query: 520 ------------QDNSQRIAAAIE-----EQGS-----------VMNHVSESIAELNTIS 551
                       Q N   + AAIE     EQG            +    ++S AE++T+ 
Sbjct: 375 GGVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTAQSTAEIHTMI 434

Query: 552 ENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFRTNRD 587
           E+    +   +  +DT S  +    E   E   + D
Sbjct: 435 EHLQSQSDAAVKAIDTSSEASRQTVEQAREAGASLD 470