Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  265 bits (677), Expect = 3e-75
 Identities = 174/517 (33%), Positives = 265/517 (51%), Gaps = 42/517 (8%)

Query: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81
           P  Q+E       +L+STTD KGVITYCND F  I+GF  DEL+   HN+VRH  +P A 
Sbjct: 6   PVTQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSRDELVRAPHNLVRHPDVPPAV 65

Query: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141
           FA MW  LKQG  W GIVKNR K+G  YWV+AYVTP+++  Q+ GY+SVR+K   + +  
Sbjct: 66  FAHMWSTLKQGLPWMGIVKNRCKTGDHYWVNAYVTPVFEGNQVVGYESVRIKPTAEQIRR 125

Query: 142 ATKAYQALLAAEKAGKK-----------IQFKLHTSLRYALLLGALMSP----ALAHGFQ 186
           A   Y  +   + A  +           + F L + L +  ++GA ++     ALA G  
Sbjct: 126 AEALYHRINQGKSAIPQRDKWLPVLQDWLPFILVSQLSF--MIGASLNSHWGFALAAGLS 183

Query: 187 APEQWQWLASLLPAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADYHL 246
                      +P G+LGL ++Q  ++   +L +       I+++      A +  +  +
Sbjct: 184 -----------VPLGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMSI 232

Query: 247 KMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAA 306
               AR++T L R+ D+A  L + A Q +         L  Q    + V  A + + +  
Sbjct: 233 LSQEARLKTCLTRLQDTAEHLNDQAAQSNTLAHNSSSGLERQRVETEQVATAVNQMAATT 292

Query: 307 ERVSSH-------THSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLS 359
           + V+SH       T  A++L  + +D   ET+ +I       QRL+       +T  +L+
Sbjct: 293 QEVASHVQRTADATQEANRLTGRGRDIAGETREAI-------QRLSVAVGETGVTVTQLA 345

Query: 360 DQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQ 419
             + ++G ++  I GIA+QTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  +T 
Sbjct: 346 KDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTG 405

Query: 420 QIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVAS 479
           QI   I  +  T  A    + A   Q E+         Q L  +   ++ +  +  ++A+
Sbjct: 406 QIHALIAKLQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAA 465

Query: 480 AAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLA 516
           A + Q  +  E++++I +IA +A Q S       QL+
Sbjct: 466 ATEEQSSVAEEISRNISTIALLADQTSEQAMNSAQLS 502