Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 9e-38
 Identities = 94/288 (32%), Positives = 157/288 (54%), Gaps = 7/288 (2%)

Query: 246 LKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESA 305
           L    A+++  L  + +SA+ LG  A ++    ++  + L AQN  I+    A   + +A
Sbjct: 252 LATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQAQNDEIEQAATAVTEMSAA 311

Query: 306 AERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQV 365
            + V+ +  S+ +      +      + I+ T  ++Q L  +   A+     L+ QAQ +
Sbjct: 312 VDEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVDEVLGASNKAEGLAVQAQDI 371

Query: 366 GQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSI 425
            +++  I GIA QTNLLALNAAIEAARAGE GRGFAVVADEVR+L+ RTQ +T++I+  I
Sbjct: 372 SKVLEVIRGIAAQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQDSTEEIEQMI 431

Query: 426 DTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQR 485
             +    +     + +S +Q     Q AN+    L+ +   +S + +    +ASAA+ Q 
Sbjct: 432 TGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAAISQISQRNLVIASAAEQQA 491

Query: 486 ELTCEVNQHIHSI-------ASVATQNSAATHTVEQLAMAMSGKVAEF 526
            +  +V++ + +I       A+ ATQ SAA+  + +LA+ ++G VA F
Sbjct: 492 LVARDVDRSLVNIRDLSTQTAAGATQTSAASQELSRLAVDLNGLVARF 539



 Score = 34.7 bits (78), Expect = 9e-06
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 44/233 (18%)

Query: 339 QNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAEQT--NLLALNAAIEAARAGEQ 396
           Q L  LAT       T   +S+ AQQ+G    E+  + EQ+  +L A N  IE A     
Sbjct: 247 QLLTALATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQAQNDEIEQAATAVT 306

Query: 397 GRGFAVVADEVRALSARTQRATQ-----------QIQTSIDTMLSTIEAWRGDITASRDQ 445
               AV  DEV   +  +  A+Q           QI  +I ++ + ++   G    +   
Sbjct: 307 EMSAAV--DEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVDEVLGASNKAEGL 364

Query: 446 TEQCAQDANTTLQQLQDVECVMSDMLR-------------------VIGEVASAAQHQRE 486
             Q AQD +  L+ ++ +    +++L                    V  EV S AQ  ++
Sbjct: 365 AVQ-AQDISKVLEVIRGI-AAQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQD 422

Query: 487 LTCEVNQHIHSI-----ASVATQNSAAT---HTVEQLAMAMSGKVAEFGALSK 531
            T E+ Q I  I      +V   NS+A    HT+++   A S       A+S+
Sbjct: 423 STEEIEQMITGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAAISQ 475