Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  140 bits (352), Expect = 2e-37
 Identities = 88/288 (30%), Positives = 151/288 (52%), Gaps = 14/288 (4%)

Query: 253 IRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSH 312
           +++ L  + +++  L   A +L   T E  + L  QN  IQ    A + + +A + V+S+
Sbjct: 258 LKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASN 317

Query: 313 THSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEI 372
             S  +   Q      + +  +      +  +  +   +  +   L+ Q +++G+++  I
Sbjct: 318 AVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVREIGKVIDVI 377

Query: 373 GGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTI 432
            GIA+QTNLLALNAAIEAARAGEQGRGFAVVADEVRAL+ RTQ +T      I+ M+  +
Sbjct: 378 RGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQIST----VDIEKMIGDV 433

Query: 433 EAWRGDITASRDQ-------TEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQR 485
           +    D  A+ ++       T+  AQ+A   LQ++      +++   VI   ASA++ Q 
Sbjct: 434 QTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRITASVAKINERNLVI---ASASEEQA 490

Query: 486 ELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
           ++  EV++++ +I  ++TQ +A  H     +  +S     F  L  +F
Sbjct: 491 QVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLATSFNVLVSKF 538



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 17/199 (8%)

Query: 339 QNLQRLATQAESAALTTLKLSDQAQQVGQL---MTEIGGIAEQTNLLALNAAIEAARAGE 395
           Q+ QR+A       LT   ++++  + GQL   ++++ G  + T +   NA+ + A A E
Sbjct: 222 QSAQRIA----QGDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAE 277

Query: 396 QGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANT 455
           +    + V DE      R     QQ  T+++ M + ++    +  ++ + + Q   +A  
Sbjct: 278 E---LSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAED 334

Query: 456 TLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQL 515
             QQ++     MS M+  I +   +         E+ + I  I  +A Q +        L
Sbjct: 335 GRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNL-------L 387

Query: 516 AMAMSGKVAEFGALSKQFA 534
           A+  + + A  G   + FA
Sbjct: 388 ALNAAIEAARAGEQGRGFA 406