Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 534 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Variovorax sp. SCN45

 Score =  200 bits (508), Expect = 1e-55
 Identities = 157/525 (29%), Positives = 237/525 (45%), Gaps = 73/525 (13%)

Query: 36  LVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAAFADMWHHLKQGHAW 95
           LVS TDLKG ITY N  F   +G+  DEL+GK HNIVRH  +P  AFAD+W  L QG  W
Sbjct: 20  LVSRTDLKGRITYVNPAFVEASGYAVDELMGKAHNIVRHPDVPPEAFADLWQTLGQGLPW 79

Query: 96  RGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEIATKAYQALLAAEKA 155
            GI+KNR  +G FYWV A VTPI + G++ GY SVR + +R  V  A   Y+ L      
Sbjct: 80  TGIIKNRRSNGDFYWVLANVTPIRRDGRVQGYMSVRSRPDRADVAEADALYRRLREGGAK 139

Query: 156 GKKIQ-------------FKLHTSLRYALLLGALMSPALAHGFQAPEQW----------- 191
           G  +Q              +L        + GA  + AL         W           
Sbjct: 140 GVTLQQGQVVQRGWMNPLAQLRRIPVRQRVFGATTAAALLTLGLGIAGWMEAGRLVASAG 199

Query: 192 --QWLASLLPAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSGAD-AFSVADYHLKM 248
              WL   L AG +G                W      + R ++   D A  VA     +
Sbjct: 200 VHSWLPGALAAGGVGFAL------------AWLGLGQFLGRTVFRPLDEALHVA---RAI 244

Query: 249 ASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAER 308
           A   +     R  D    L    NQ+   +  +   +A   +N+  V  A+  + S  + 
Sbjct: 245 AGGDLAKFEIRRGDEITGLLRALNQM---SANLFAIVADVGTNVAGVMSASSQIASGNQD 301

Query: 309 VSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLK----------- 357
           +SS T      ++Q      E   ++     N ++    A SA+   +K           
Sbjct: 302 LSSRTEQQASSLEQTAASMEELTSTVKQNADNARQANQLAVSASEVAVKGGSVVSQVVDT 361

Query: 358 ---LSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSART 414
              ++  ++++  ++  I GIA QTN+LALNAA+EAARAGEQG+GFAVVA EVR+L+ R+
Sbjct: 362 MGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRS 421

Query: 415 QRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVI 474
             A ++I+T I   +  +EA           ++Q A+   T    ++++   +  +  ++
Sbjct: 422 AAAAKEIKTLIGDSVEKVEA----------GSKQVAEAGRT----MEEIVGSVRRVTDIM 467

Query: 475 GEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLAMAM 519
           GE+ +A+Q Q     ++NQ I  +  V  QN+A        A ++
Sbjct: 468 GEITTASQEQTSGIEQINQAIAQMDQVTQQNAALVEEASATAQSL 512