Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

 Score =  238 bits (606), Expect = 5e-67
 Identities = 171/535 (31%), Positives = 271/535 (50%), Gaps = 44/535 (8%)

Query: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81
           P  + E       +L+STTDL   ITYCND F  I+GF  DEL+G+ HN+VRH  MP A 
Sbjct: 6   PVTEHERTFPGDQRLISTTDLDSRITYCNDAFVAISGFTYDELVGQPHNLVRHPDMPPAV 65

Query: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141
           F  MW  +KQG  W GIVKNR K+G +YWV AYVT IY+QG+++GY+SVR    R+ +  
Sbjct: 66  FGHMWETIKQGKPWMGIVKNRAKNGDYYWVSAYVTAIYEQGRISGYESVRSVPTREQIRR 125

Query: 142 ATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMS---PALAHGFQAPEQWQWLASLL 198
           A    +AL A  + G+       + + +A  LG  +    P +  G  +   + WL    
Sbjct: 126 A----EALYARLRDGR-------SPVPWAARLGHGLGHGWPLIGAGLLSAAGYLWLP--- 171

Query: 199 PAGVLGLLFRQELV-------RTPQQLKQWQNEY-----DSISRLIYSGADAF-SVADYH 245
           P   L +L    L+       R  Q +++   E+       +  L YS         D  
Sbjct: 172 PYAALAVLMASLLLAWYWVEHRQNQAIRRTLAEHPKAFTSPLVALTYSDNPGLKGQLDLA 231

Query: 246 LKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESA 305
           +    AR++T L R++D+   +   A Q    +    Q L  Q S      Q+  A+   
Sbjct: 232 IISEEARLQTALTRLVDAGVGVKSRAAQSSDLSDAQAQMLDRQRSE---TDQSATAIAQM 288

Query: 306 AERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESA---ALTTLKLSDQA 362
           A  +   TH+         D     +    +  ++L+ + + +++          L++Q 
Sbjct: 289 AATIQQVTHNVQSTAHAASDADQLAQQGSELALKSLKDMGSMSDAVNDIGQAVNALAEQT 348

Query: 363 QQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQ 422
           Q +G ++  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+L+ RT+ +T++I 
Sbjct: 349 QSIGSVVDVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTRASTEEIH 408

Query: 423 TSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQ----DVECVMSDMLRVIGEVA 478
             I ++ +  E  R   TASR   EQ ++D+  +++ +Q     +   +S +  +  ++A
Sbjct: 409 HIIASLRAGAE--RAVSTASRG--EQISRDSVHSVEAVQAALSGIAVAVSRITGMSQQMA 464

Query: 479 SAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533
           +A++ Q  +  ++NQ I  IA +  Q++       +++  +        +L+++F
Sbjct: 465 TASEQQSHVAEDINQQIVRIAQLCDQSAGQARQGAEISQDLERMAEYLHSLAERF 519



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 270 LANQLHLTTQEVHQALAAQNSNIQ-AVTQAT-------------DAVESAAERVSSHTHS 315
           LA +   +T+E+H  +A+  +  + AV+ A+             +AV++A   ++     
Sbjct: 396 LAQRTRASTEEIHHIIASLRAGAERAVSTASRGEQISRDSVHSVEAVQAALSGIAVAVSR 455

Query: 316 AHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGI 375
              +  Q+     +  H     +Q + R+A   + +A    + ++ +Q + ++   +  +
Sbjct: 456 ITGMSQQMATASEQQSHVAEDINQQIVRIAQLCDQSAGQARQGAEISQDLERMAEYLHSL 515

Query: 376 AEQTN 380
           AE+ N
Sbjct: 516 AERFN 520