Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 986 a.a., PAS domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  124 bits (311), Expect = 2e-32
 Identities = 65/162 (40%), Positives = 89/162 (54%)

Query: 17  MSAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHAS 76
           M    P    E+ + +   LVS TDL G IT+ N  F  I+G+  +EL+G  HN+VRH  
Sbjct: 1   MRVNEPITNHEIELPEGTILVSKTDLGGRITFVNQAFIEISGYTEEELIGAPHNLVRHPH 60

Query: 77  MPKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAER 136
           MP  AFAD+W+ +K G  W GIVKNR K+G  YWV A  TP  + GQ+TGY S+R    R
Sbjct: 61  MPPVAFADLWNTIKAGKPWEGIVKNRAKNGDHYWVRANATPEMEGGQITGYISIRTAPTR 120

Query: 137 KWVEIATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMS 178
             VE A   Y+ + + +    K++     S   A  LG  ++
Sbjct: 121 AQVEAAEHLYEQVRSGKARNIKVEEGRVLSTTAAARLGRALN 162



 Score = 96.7 bits (239), Expect = 4e-24
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 59/296 (19%)

Query: 251 ARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVS 310
           A I T   R+ + A  L   A +L   ++ V +A+   + N+Q V  AT+ +E+++  ++
Sbjct: 457 AEISTQAERLKEGAAHLLATAEELRDKSETVARAIEITSGNVQTVAGATEELEASSREIT 516

Query: 311 SHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMT 370
           +   S+        +H    +H ++           +A S+  T   L++   ++G +++
Sbjct: 517 ARIQSS-------SEHSEAARHRVD-----------EASSSVGT---LTEATARIGDVVS 555

Query: 371 EIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLS 430
            I  IA QT +LALNA IEAARAG+ G+GFAVVA EV+ L+ +T+ A             
Sbjct: 556 LIQAIAGQTRMLALNATIEAARAGDAGKGFAVVASEVKGLAEQTEDAI------------ 603

Query: 431 TIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCE 490
                 G + A     E   Q A  T++ + D    + DM ++ G++A++A  QR  T E
Sbjct: 604 ------GRVNAQARDIESTTQKAVATVEAVAD---TIRDMEQIAGQIAASADEQRAATGE 654

Query: 491 V-------NQHIHSIASVAT-------QNSAATHTVEQLAMAMSGKVAEFGALSKQ 532
           +         H   +A  A        Q       V +L+M ++    + GAL ++
Sbjct: 655 IMSSAVQAADHTRDVADAAADVLKASEQTGVTARKVSELSMLVN---HDIGALQRR 707