Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 741 a.a., PAS domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  128 bits (322), Expect = 7e-34
 Identities = 64/135 (47%), Positives = 81/135 (60%)

Query: 26  QEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAAFADM 85
           +EV + D D LVS TD  G IT+ N  F  I+GF   ELLG  HN+VRH  MPK AFAD+
Sbjct: 32  REVELKDDDMLVSRTDAGGRITFVNKAFIDISGFTEQELLGSPHNLVRHPHMPKEAFADL 91

Query: 86  WHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEIATKA 145
           W  +K G  W G VKNRTK+G  YWV A VTP  ++GQ+ G+ S+R K  R  +  A +A
Sbjct: 92  WASIKAGRPWEGYVKNRTKTGDHYWVRANVTPFMEKGQIAGFISIRSKPTRAQINAAEQA 151

Query: 146 YQALLAAEKAGKKIQ 160
           Y      +  G  I+
Sbjct: 152 YALFREGKARGLAIR 166



 Score = 92.4 bits (228), Expect = 5e-23
 Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 43/283 (15%)

Query: 258 GRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAH 317
           G ++ +A+ L   A Q  +    V        +N+Q+V+ AT  + S+   +S     A 
Sbjct: 487 GSLLGNAQTLSANAQQTMVQAGNVTAMTGQVTANVQSVSAATQELSSSVTEISRQVAHAA 546

Query: 318 QLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAE 377
            +         ET   +                       L++ AQ++G+++  I  IA 
Sbjct: 547 TISGDAVRQAGETDRMVR---------------------SLAEAAQKIGEVVNLITDIAS 585

Query: 378 QTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRG 437
           QTNLLALNA IEAARAGE G+GFAVVA+EV+ L+ +T +AT++I                
Sbjct: 586 QTNLLALNATIEAARAGEAGKGFAVVANEVKHLANQTAKATEEIGQ-------------- 631

Query: 438 DITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHS 497
            +TA + +T    +   +    ++++  + S +   + E  +A     E+   V Q  H 
Sbjct: 632 QVTAIQGETRSAVEAIRSISGTIENISELSSAIAAAVEEQGAAT---AEIARSVEQAAHG 688

Query: 498 IASVATQNSAATHTVEQLAMAMSGKVAE----FGALSKQFAQK 536
            AS A      +   E+  + MS +V E        S Q AQ+
Sbjct: 689 TASAAENVEVVSGAAEETKL-MSDQVYEAANGLKGASNQLAQE 730