Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  189 bits (480), Expect = 2e-52
 Identities = 169/524 (32%), Positives = 236/524 (45%), Gaps = 56/524 (10%)

Query: 17  MSAYTPSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHAS 76
           M   +P  Q E L+ D   L+STTD K  ITY N  F   +G++ + LLG+ HN++RH  
Sbjct: 1   MRRNSPVTQNEYLLNDGSTLMSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPD 60

Query: 77  MPKAAFADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAER 136
           MP  AF DMW  L+QG  W G+VKNR  +G  YWV A VTP++Q G LTGY SVR    R
Sbjct: 61  MPAEAFGDMWFTLQQGETWTGLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAR 120

Query: 137 KWVEIATKAYQALLAAEKAGKKIQFKLHTSLRYAL-----LLGALMSPALAH-GFQAPEQ 190
           + +  + K Y  +   E   K  +F     +R  L     L   L +    H G      
Sbjct: 121 EEIAASEKLYAKVRNNEL--KHYRFYKGLLVRRGLFSFMSLFKCLSTSKRIHLGIATTAL 178

Query: 191 WQWLA------SLLPAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSGADAFSVADY 244
              LA       L+ +G L LLF         Q+ +      SI + + S         Y
Sbjct: 179 LSCLAVYLFPDKLVQSGSLVLLFTSLAYYLHAQIAR---PVKSIVQQMQSVVSGRKTDYY 235

Query: 245 HLKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVES 304
           H      RI  I G MM        L NQ  L    +   + AQ S I  ++Q   A E 
Sbjct: 236 HFD----RIDDI-GLMM-------RLVNQSGLNLNSLVDDVGAQISGIGTISQQV-AKEG 282

Query: 305 AAERVSS--------HTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTL 356
           AA +  S         T SA + I       AET           +  A + E+    T+
Sbjct: 283 AALQTRSEETADFLQQTASAVEEIASAVKQTAETAKEATEMADRTRDSAHRGEAMMKETI 342

Query: 357 ----KLSDQAQQVGQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSA 412
                +S    Q+  +++ I  IA QTN+LALNAA+EAARAGE GRGFAVVA EVR L+ 
Sbjct: 343 GMMQSVSQDNSQIVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQ 402

Query: 413 RTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLR 472
            +  A ++I+  I+  ++++ A    +    +QTE       T L  + D    +S +++
Sbjct: 403 HSATAAKEIKALIEKNVASVNAGVEKV----EQTE-------TQLTVMIDNVLRVSSLIK 451

Query: 473 VIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVEQLA 516
            IG    A Q Q +    +N  I  I ++   N+     V   A
Sbjct: 452 EIGH---ATQEQTQALTLINASISRIGAMTHNNTGMVDNVTHAA 492



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 255 TILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAV-------TQATDAVESAAE 307
           T L  M+D+   +  L  ++   TQE  QAL   N++I  +       T   D V  AA 
Sbjct: 434 TQLTVMIDNVLRVSSLIKEIGHATQEQTQALTLINASISRIGAMTHNNTGMVDNVTHAAN 493

Query: 308 RVSSHTHSAHQLI 320
            ++  T    Q I
Sbjct: 494 HLTQRTTRLQQAI 506