Pairwise Alignments

Query, 330 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

 Score =  118 bits (295), Expect = 2e-31
 Identities = 88/306 (28%), Positives = 154/306 (50%), Gaps = 16/306 (5%)

Query: 6   DVARLAGVSKSTVSRVINDEYGVKESTKIKVLKAVEQCGYMVNQVAKDLKSQKTNLIGVI 65
           D+ARL+GV KSTVSRV+ ++  VK  T+ KV + + + GY+ ++ A+ ++     ++G+I
Sbjct: 9   DIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGGSQKVVGII 68

Query: 66  VPRVSSHATAQGVDGLTAIFEQAGKHVLLANTHQVHAKEIEYIQIFNQKRVEG-IVFYAT 124
           + R+ S +  + V  +   F   G  V++  +     K   ++++  +++V+G IVF  T
Sbjct: 69  ISRLDSPSENKAVSTMLQAFYAHGYDVVIMESQFSREKTNAHLKVLAKRQVDGVIVFGFT 128

Query: 125 HLDQPLVHAIQHSAVPVVLVGQDGSLYNIPSIVHDDHRVGFEAGQRLVKAGCKQIGFIGV 184
            +D   + + QH  V + +   +     I SI +D+  V   A Q L +   + I FIGV
Sbjct: 129 DIDHDALLSWQHRCVLLAMHSDE-----ISSINYDNAGVIERALQHLAQKQLRDIAFIGV 183

Query: 185 QSDDIAVDVLRSQGLQQALGF--HQQTLLFHARGNFSIESGYQMAKQAYLDYPQLDGLFC 242
              D        Q L   L +    + +  +  G    ES Y +  +   +  Q   + C
Sbjct: 184 DPRD---KTTGEQRLNAYLNWCVEHEIVANYQTGQLHHESAYLLVDKVLTE--QTQAIVC 238

Query: 243 ATDRLAVGAIKALQELGVHVGQQVKLLGVGNDELAYVSNPPLSTFNYAFDKAGENAAKML 302
           A+D LA+G IK LQEL       V + GVG +EL     P + + +  + +AG+ AA +L
Sbjct: 239 ASDTLALGVIKRLQEL---QRDDVVVTGVGGNELLSFLFPNIFSVDPGYREAGKLAADLL 295

Query: 303 LERIAG 308
           +E++ G
Sbjct: 296 IEQLCG 301