Pairwise Alignments

Query, 330 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  126 bits (316), Expect = 9e-34
 Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 1   MASLHDVARLAGVSKSTVSRVINDEYGVKESTKIKVLKAVEQCGYMVNQVAKDLKSQKTN 60
           MA++ DVA LAG+S +TVS V+N    V E  ++KV  A+ +  Y+ + VA+ LK++ T 
Sbjct: 1   MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60

Query: 61  LIGVIVPRVSSHATAQGVDGLTAIFEQAGKHVLLANTHQVHAKEIEYIQIFNQKRVEGIV 120
            IG++VP   +   A+   G+    E+ G  V+L N+     K+  Y+++  +KR++G+V
Sbjct: 61  TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120

Query: 121 FYATHLDQPLVHAIQHSAVPVVLVGQDGSLYNIPS-IVHDDHRVG-FEAGQRLVKAGCKQ 178
             +   D  L+ ++     P+V+V  D  L  + + +V  DH  G + A + L++ G + 
Sbjct: 121 VASVGQDDDLLQSLASVRTPMVIV--DRELEGVDADLVRIDHEQGAYLATRHLLELGHRD 178

Query: 179 IGFIGVQSDDIAVDVLRSQGLQQALGFHQQTL----LFHARGNFSIESGYQMAKQAYLDY 234
           + +IG  + +  V  LR  G ++A+      +    + H   +F+   G+  A Q  L+ 
Sbjct: 179 VAYIGGPA-ETGVTQLRLSGFRRAMAEAGAPVPGSRVLHC--DFTSPGGHAAAAQV-LEG 234

Query: 235 PQLDGLFCATDRLAVGAIKALQELGVHVGQQVKLLGVGNDELAYVSNPPLSTFNYAFDKA 294
            +   +F   D +  G ++A  E  + V  ++ ++G  + EL+    P L+T   +  + 
Sbjct: 235 KRPSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIREL 294

Query: 295 GENAAKMLLERIA 307
           GE+AA +LL RIA
Sbjct: 295 GESAASLLLTRIA 307