Pairwise Alignments

Query, 330 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Ribose operon repressor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  115 bits (289), Expect = 1e-30
 Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 12/324 (3%)

Query: 4   LHDVARLAGVSKSTVSRVINDEYGVKESTKIKVLKAVEQCGYMVNQVAKDLKSQKTNLIG 63
           + DVARLAGVS STVS VIN +  V E+   KV  A++   Y  + +A+ LK  +T  IG
Sbjct: 1   MKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLNYAPSALARSLKLNQTRTIG 60

Query: 64  VIVPRVSSHATAQGVDGLTAIFEQAGKHVLLANTHQVHAKEIEYIQIFNQKRVEGIVFYA 123
           +++   ++   ++ V G+     + G  ++L NT     +    ++   QKRV+G++   
Sbjct: 61  MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC 120

Query: 124 THLDQPLVHAIQ-HSAVPVVLVGQ---DGSLYNIPSIVHDDHRVGFE-AGQRLVKAGCKQ 178
           T   QP    ++ + ++P V++     DG       ++ D+  +G + A Q L+  G  +
Sbjct: 121 TETHQPSREIMERYPSIPTVMMDWSPFDGE--GDSDLIQDNSLLGGDLATQYLIDKGFTR 178

Query: 179 IGFIGVQSDDIAVDVLRSQGLQQALGFHQQTLL--FHARGNFSIESGYQMAKQAYLDYPQ 236
           I  I    D      LR +G + A+      +   +   G+F    G+  A QA L + Q
Sbjct: 179 IACITGPLDKTPAR-LRLEGYRAAMKRAGLAIPQGYEITGDFEFGGGFD-AMQALLAHQQ 236

Query: 237 L-DGLFCATDRLAVGAIKALQELGVHVGQQVKLLGVGNDELAYVSNPPLSTFNYAFDKAG 295
               +F   D +AVGA +AL + G+ + Q + ++G  + ELA    PPL+T +   D+ G
Sbjct: 237 RPQAVFTGNDAMAVGAYQALYQAGLRIPQDMVVIGYDDIELARYMTPPLTTIHQPKDELG 296

Query: 296 ENAAKMLLERIAGRGQEMSKVVLT 319
           E A  +L+ R+A    +  ++ LT
Sbjct: 297 ELAIDVLIHRMAQPALQQQRLQLT 320