Pairwise Alignments

Query, 330 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) from Escherichia coli BW25113

 Score =  129 bits (323), Expect = 1e-34
 Identities = 95/337 (28%), Positives = 169/337 (50%), Gaps = 17/337 (5%)

Query: 1   MASLHDVARLAGVSKSTVSRVINDEYGVKESTKIKVLKAVEQCGYMVNQVAKDLKSQKTN 60
           MA++ DVA+ A VS +TVS VIN    V E T+  V  A+++  Y  + VA+ LK   T 
Sbjct: 1   MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK 60

Query: 61  LIGVIVPRVSSHATAQGVDGLTAIFEQAGKHVLLANTHQVHAKEIEYIQIFNQKRVEGIV 120
            IG++     +   A+ ++ +     Q G  ++L N      K+  Y+ +  QKRV+G++
Sbjct: 61  SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLL 120

Query: 121 FYATHLDQPLVHAI-QHSAVPVVLVGQDGSLYNIPSIVHDD-HRVGFEAGQRLVKAGCKQ 178
              +   +PL+  + ++  +P+V++    +  +    V D+    G+ AG+ L++ G ++
Sbjct: 121 VMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRE 180

Query: 179 IGFIGVQSDDIAVDVLRSQGLQQALGF---HQQTLL-----FHARGNFSIESGYQMAKQA 230
           IG I    +       R+ G  +  GF    ++ ++     +  +G+F  ESGY+  +Q 
Sbjct: 181 IGVIPGPLE-------RNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQI 233

Query: 231 YLDYPQLDGLFCATDRLAVGAIKALQELGVHVGQQVKLLGVGNDELAYVSNPPLSTFNYA 290
                +   +FC  D +A+GA+ A  E+G+ V Q V L+G  N   A    P L+T +  
Sbjct: 234 LSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQP 293

Query: 291 FDKAGENAAKMLLERIAGRGQEMSKVVLTFQNIQRET 327
            D  GE A  MLL+RI  + +E   + +  + I+R +
Sbjct: 294 KDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRS 330