Pairwise Alignments

Query, 567 a.a., NADH oxidase from Vibrio cholerae E7946 ATCC 55056

Subject, 1399 a.a., nitrite reductase small subunit NirD from Dickeya dianthicola ME23

 Score =  118 bits (296), Expect = 1e-30
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 41/349 (11%)

Query: 21  RRLSEDAEIIMFERGPYVSFANCGLPYHIGGDIKERSNLLLQTPESFLARFNVDVRTMNE 80
           R L +   +++F    + ++    L  +  G   E  +++    + F  +  +++RT  +
Sbjct: 443 RSLHQQYHVVVFGEERHPAYDRVHLSEYFAGRSAESLSMV---SDGFFEQHGIELRTGCQ 499

Query: 81  VLRINRAAKTITVRNLLDQSEYDENYDFLLLSPGAGPVIPPIPGIQNPLTHSLRNIPDMD 140
           V  I+R  + +      D +  +  YD L+L+ G+ P +PP+ G   P     R + D+D
Sbjct: 500 VTEIDRQRRCVR-----DANGQETPYDRLVLATGSYPFVPPMAGNDRPGCLVYRTLDDLD 554

Query: 141 KIIQTLQMNKPEHATVVGGGFIGLEMMEAFHHLGIKTTLIEMADQVMT-PVDREMAGFAH 199
            I    Q  +     VVGGG +GLE   A   LG++T ++E A ++M   +D   A    
Sbjct: 555 AI--AAQARESRSGVVVGGGLLGLEAANALRQLGLETHVVEFAPRLMAVQLDDGGAQLLK 612

Query: 200 AEIRAKGIDLRLGAALKSVEYRPAATLPSAESGESLEHKHVEGELDLLLSNGDTLTTDIL 259
            +I A G+ +  G   +++            +GE   H+       +  ++G  L TD++
Sbjct: 613 RKIEALGLQVHTGKETRAIT-----------AGEQARHR-------MNFADGTALETDLV 654

Query: 260 IMAIGVRPETKLAAEAGLQLGELGGIWVNEQMQTSDPAIYAVGDAVEEKDFVTGKQTLVP 319
           + + G+RP  +LA +AGL+ G  GGI +N+   TSD AI+A+G+    +  + G      
Sbjct: 655 LFSAGIRPRDQLARDAGLETGARGGIVINDSCLTSDDAIFAIGECALWQGQMFG------ 708

Query: 320 LAGPANRQGRMAADNML------GRNESYQGTQGTAICKIFDLAVASTG 362
           L  P  +  R  A  +        + +S+ G   +   K+  + VAS G
Sbjct: 709 LVAPGYQMARTVAARLAQMAQQEQQEQSFTGADMSTKLKLLGVDVASIG 757



 Score = 90.5 bits (223), Expect = 4e-22
 Identities = 94/372 (25%), Positives = 161/372 (43%), Gaps = 42/372 (11%)

Query: 4   IVIIGGVAGGASAAARARRLSEDA----EIIMFERGPYVSFANCGLPYHIGGDIKERSNL 59
           +VIIG    G S+A   +RL + A     + + +R P  S+    L   +GG+       
Sbjct: 5   LVIIGN---GLSSARLVKRLGQLAPQRYRVTVIDREPRDSYNRVLLSSVLGGEKTFEDTQ 61

Query: 60  LLQTPESFLARFNVDVRTMNEVLRINRAAKTITV--RNLLDQSEYDENYDFLLLSPGAGP 117
           L   P    A  +V + T    L I+R A+ +T   R L         YD L+ + G+ P
Sbjct: 62  LEPAP----ATMDVTILTGESALSIDRDAREVTTDRRRLA--------YDQLVFATGSRP 109

Query: 118 VIPPIPGIQNPLTHSLRNIPDMDKIIQTLQMNKPEHATVVGGGFIGLEMMEAFHHLGIKT 177
            +P +PGI  P     R + D++++   ++  +P    V+GGG +G+E   A    G   
Sbjct: 110 FMPLLPGIDLPGVMGFRTLDDVERMWAAVRQGRP--VVVIGGGLLGIEAAAALRLQGATV 167

Query: 178 TLIEMADQVM-TPVDREMAGFAHAEIRAKGIDLRLGAALKSVEYRPAATLPSAESGESLE 236
           TL+    ++M   +D   +    + +  +GI    G  ++++          + +G+   
Sbjct: 168 TLLHRHARLMERQLDATASDLLCSRLHERGIRCLTGVQIRALSSNEWCGNEWSGNGQ--- 224

Query: 237 HKHVEGELDLLLSNGDTLTTDILIMAIGVRPETKLAAEAGLQLGELGGIWVNEQMQTSDP 296
              VE    + L++G  L   ++++A GV+P  +LA ++GL  G   GI  + Q++T+D 
Sbjct: 225 ---VEA---VELADGTRLPAGLVVVATGVQPVCELARDSGLACGR--GILADGQLRTADE 276

Query: 297 AIYAVGDAVEEKDFVTGKQTLVPLAGPANRQGRMAADNMLGRN-ESYQGTQGTAICKIFD 355
            I A G+  E K    G      L  P   Q  + A  + GR    Y         K+  
Sbjct: 277 YISAFGECAEVKGETVG------LVAPCLAQADVLAARLAGRPVADYAPAALATRLKVTG 330

Query: 356 LAVASTGKNEKQ 367
           + V S G+   Q
Sbjct: 331 IDVVSAGELHPQ 342