Pairwise Alignments

Query, 567 a.a., NADH oxidase from Vibrio cholerae E7946 ATCC 55056

Subject, 1391 a.a., nitrite reductase small subunit NirD from Dickeya dadantii 3937

 Score =  123 bits (309), Expect = 4e-32
 Identities = 86/342 (25%), Positives = 165/342 (48%), Gaps = 33/342 (9%)

Query: 21  RRLSEDAEIIMFERGPYVSFANCGLPYHIGGDIKERSNLLLQTPESFLARFNVDVRTMNE 80
           R L +   +++F    + ++    L  +  G   E  +++    E F  +  +++RT  +
Sbjct: 443 RNLHQQYHVVVFGEERHPAYDRVHLSEYFAGRSAESLSMV---SEGFFEQTGIELRTGCQ 499

Query: 81  VLRINRAAKTITVRNLLDQSEYDENYDFLLLSPGAGPVIPPIPGIQNPLTHSLRNIPDMD 140
           V+ I+R  + +      D +  +  YD L+L+ G+   +PPI G   P     R + ++D
Sbjct: 500 VMTIDRQRRCVR-----DANGQETPYDRLVLATGSYAFVPPIKGNDRPGCLVYRTLDNLD 554

Query: 141 KIIQTLQMNKPEHATVVGGGFIGLEMMEAFHHLGIKTTLIEMADQVMTPVDREMAGFAHA 200
            I    Q  +     VVGGG +GLE   A   LG++T ++E A ++M  V  +  G    
Sbjct: 555 AIAD--QARESRSGVVVGGGLLGLEAANALRQLGLETHVVEFAPRLMA-VQLDDGGAQLL 611

Query: 201 EIRAKGIDLRLGAALKSVEYRPAATLPSAESGESLEHKHVEGELDLLLSNGDTLTTDILI 260
             + + ++L +  + ++V         +  +GE   H+       +  ++G +L TD+++
Sbjct: 612 RRKIEALNLHVHTSKETV---------AITAGEQARHR-------MNFADGTSLETDLIL 655

Query: 261 MAIGVRPETKLAAEAGLQLGELGGIWVNEQMQTSDPAIYAVGDAVEEKDFVTGKQTLVPL 320
            + G+RP  +LA+EAGL++G  GGI +++  QTSD AI+A+G+    +  + G      L
Sbjct: 656 FSAGIRPRVRLASEAGLEIGVRGGIVIDDHCQTSDDAIFAIGECAVWQGQIFG------L 709

Query: 321 AGPANRQGRMAADNMLGRNESYQGTQGTAICKIFDLAVASTG 362
             P  +  R  A  +  + +++ G   +   K+  + VAS G
Sbjct: 710 VAPGYQMARTVAARLAQQEQTFIGADMSTKLKLLGVDVASIG 751



 Score = 99.0 bits (245), Expect = 1e-24
 Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 39/319 (12%)

Query: 4   IVIIGGVAGGASAAARARRLSEDA----EIIMFERGPYVSFANCGLPYHIGGDIKERSNL 59
           +VIIG    G S+    +RL + A     + + +R P  S+    L   +GG+       
Sbjct: 5   LVIIGN---GLSSVRLVKRLGQLAPQRYRVTVIDREPRDSYNRVLLSSVLGGEKSFEDTQ 61

Query: 60  LLQTPESFLARFNVDVRTMNEVLRINRAAK-TITVRNLLDQSEYDENYDFLLLSPGAGPV 118
           L   PE+     +V   T   VLRI+R+A+  IT R  L        YD L+ + G+ P 
Sbjct: 62  LEPAPETM----DVTTLTGESVLRIDRSAREVITDRRRLA-------YDQLVFATGSRPF 110

Query: 119 IPPIPGIQNPLTHSLRNIPDMDKIIQTLQMNKPEHATVVGGGFIGLEMMEAFHHLGIKTT 178
           +PP+PGI  P     R + D++++   ++  KP    V+GGG +G+E   A    G   T
Sbjct: 111 MPPLPGIDLPGVMGFRTLDDVERMWAAVRQEKP--VVVIGGGLLGIEAAAALRLQGATVT 168

Query: 179 LIEMADQVM-TPVDREMAGFAHAEIRAKGIDLRLGAALKSVEYRPAATLPSAESGESLEH 237
           L+    ++M   +D   +      +  +GI    G  ++++            SG  L  
Sbjct: 169 LLHRHARLMERQLDATASDLLCTRLHERGIRCLTGVQIQAL------------SGNELSG 216

Query: 238 KHVEGELD---LLLSNGDTLTTDILIMAIGVRPETKLAAEAGLQLGELGGIWVNEQMQTS 294
             + G      + L++G  L   ++++A GV+P  +LA ++GL  G   GI  + Q++T+
Sbjct: 217 NELSGGKQVEAVELADGTRLPAGLVVVATGVQPVCELARDSGLACGR--GILADGQLRTA 274

Query: 295 DPAIYAVGDAVEEKDFVTG 313
           D  + AVG+  E K    G
Sbjct: 275 DEYVSAVGECAEVKGETVG 293