Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  114 bits (285), Expect = 4e-30
 Identities = 95/329 (28%), Positives = 150/329 (45%), Gaps = 9/329 (2%)

Query: 12  LASSAYAQNQDSNERFTVKTELI-----SQIVELDGVVQPVNQGSLAAQTSGRVVGLYVD 66
           L++   AQ   + E   V+T +      S  V L GVV+  N+ +   + SGRV+   V+
Sbjct: 31  LSACGEAQKPQAQEPRPVRTVVATNRAASDAVSLTGVVEAQNEATYGFRISGRVIDRLVN 90

Query: 67  VNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQ 126
           V D V   QVL  +    +  AL +AQA L +A A   + + Q  R RQL  +G   + Q
Sbjct: 91  VGDRVAPGQVLARLDPQDEQNALRSAQAALGAANANLTQTRNQYERQRQLLARGFTPRAQ 150

Query: 127 MDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLL 186
            + AE    +A A V  A+A ++ A++ LG+T + A   G+VTQR  E GE V  G P++
Sbjct: 151 YEQAEQAFLNARAQVDDAEARLQMAEDRLGFTELKADSAGVVTQRRAEPGEVVQAGQPVI 210

Query: 187 RGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPV--EFSLFSYADPQSHTFKT 244
                D      ++P      +    + TV  A    +        +   ADP + TF+ 
Sbjct: 211 EVARQDGRDAVFDVPAAMLSGLPGDPEVTVALATDPAVTATGRVREVAPQADPVTRTFRV 270

Query: 245 RLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQR--ALNPV 302
           R+ L      L  G  V       +  V+ +P+SA+ R  +  AV+ V+   +  AL  +
Sbjct: 271 RVGLTNPPEGLRLGTTVVGRVMVDRGPVVEIPASALTRLNDKPAVWVVDPKTQTVALRTI 330

Query: 303 RLGQVYGDYVEVLSGLELGDVVATQAVTA 331
            + +     V V  GL+  ++V T  V A
Sbjct: 331 EVLRFGPASVSVGEGLKPSEIVVTAGVQA 359