Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., Efflux pump periplasmic linker BepF from Xanthobacter sp. DMC5

 Score = 94.7 bits (234), Expect = 4e-24
 Identities = 86/321 (26%), Positives = 143/321 (44%), Gaps = 24/321 (7%)

Query: 28  TVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSA 87
           TV  + I++ +EL G    +N   L A+  G +  +      F KK   L  I      A
Sbjct: 45  TVLEQPITRFLELTGNTAAINSVDLNARVQGFLTNINYKDGAFAKKGTTLFVIEQDTYIA 104

Query: 88  ALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAA 147
            +D A+A LA+  A   +A+A+ NR  QL  +   S+  +D A A+  SA A V +A+A+
Sbjct: 105 QVDQAKATLAANQASQVQAEAEFNRQNQLAKQDFASQAALDQARAKRDSAVAQVANAEAS 164

Query: 148 VEQAKESLGYTNITAPYDGIVTQRMVELG-----------ETVAPGTPLLRGFSLDE--- 193
           ++ A+ +LGYT + AP+DG VT  + ++G            T+    P+   F+L E   
Sbjct: 165 LQLAQINLGYTQVNAPFDGAVTAHLQDVGALVGYSGPTKLATIVQLNPIWVWFTLSEQEV 224

Query: 194 LRVETEIPQRYQPYVA---DVSQFTVRTAQGEQLKPVEFSLFSY----ADPQSHTFKTRL 246
           LR++ ++ ++ +   +   D+    +      +          Y     DP   T   R 
Sbjct: 225 LRIKEQLAKQGRSLTSLTRDLPDIPIEIGLQTETGYPHAGRIDYIAPQVDPNLGTLTVRG 284

Query: 247 ELPQNSAALVPGMWVKTEFNYGQ-REVLVVPSSAVLRRAELSAVYRVNNGQ-RALNPVRL 304
               +   L+PG++ +     GQ    ++VP SAV        V  V++        + L
Sbjct: 285 IFQNDDFVLLPGLFARVRVPLGQPAPTILVPDSAVSYNQLGPYVLTVSSDNVVGQTQITL 344

Query: 305 GQVYGDYVE-VLSGLELGDVV 324
           GQ+  D +  VLSGL+  D V
Sbjct: 345 GQLQADGLRAVLSGLKTTDRV 365