Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  105 bits (263), Expect = 1e-27
 Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 18/309 (5%)

Query: 37  IVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQL 96
           ++E+ G ++P  Q  L+ +  GR++   V+V D V KDQV+  I       A+ +A A++
Sbjct: 45  VLEVAGTIEPQVQTDLSFRVLGRLLARSVNVGDVVTKDQVVAAIDDTALKLAVRSALAEV 104

Query: 97  ASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLG 156
           A+A AQ   A    +R R L    A S+   ++AE    +A+A++  AQA + +A+E LG
Sbjct: 105 ANAQAQLTNASGTEDRQRTLLETAATSRATFETAEQGRAAAEASLARAQANLVKAREQLG 164

Query: 157 YTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQF-- 214
           Y  + A + G+VT    ELG+ V+PG  ++     D      +I + +   +   S F  
Sbjct: 165 YAQLKAEFAGVVTAVGAELGQVVSPGRSVVTIARPDVREAVVDIGEDFIGDIRIGSPFQL 224

Query: 215 -------TVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNY 267
                   V T +  ++ P        AD  + T + R+ L     A   G  V      
Sbjct: 225 SLQLDGAPVATGRVREIAP-------QADSVTRTRRVRITLDNPPEAFRLGATVAARPAG 277

Query: 268 GQREVLVVPSSAVLRRAELSAVYRVNNGQRALN--PVRLGQVYGDYVEVLSGLELGDVVA 325
                L +P SAV  R   S V+RV    R ++   +      GD   V +GLE G  + 
Sbjct: 278 NLASDLFIPGSAVFTRDGKSFVWRVTAEDRTVHAQEITASAASGDKARVTAGLEAGTRLV 337

Query: 326 TQAVTAKGE 334
           T  V +  E
Sbjct: 338 TAGVHSLSE 346