Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 91/351 (25%), Positives = 146/351 (41%), Gaps = 28/351 (7%)

Query: 3   ALSWSIALVLASSAYAQNQDSNERFTVKTELISQIVELD-----------GVVQPVNQGS 51
           AL   + +VLA +A+A  + +  +    T +  ++V +            G V  ++   
Sbjct: 8   ALIAGVLVVLAVAAWALTRPAKSKLAAPTAIPVRVVSVAQQDIPRFVSGIGSVLSLHSVV 67

Query: 52  LAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLN 111
           +  Q  G +  L V     VK   +L  I      A+LD A+AQL  + AQ + A   L 
Sbjct: 68  IRPQVDGILTKLLVKEGQLVKAGDLLATIDDRSIRASLDQAKAQLGESQAQLQVALVNLK 127

Query: 112 RYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQR 171
           RY+ L     +SK   D  +A      A  +  QAA++ A+  L YT I +P  G V  R
Sbjct: 128 RYKALSVDDGVSKQTYDQQQALVNQLKATAQGNQAAIDSAQVQLSYTQIRSPVSGRVGIR 187

Query: 172 MVELGE--TVAPGTPLLRGFSLDELRVETEIPQRYQPYV---------ADVSQFTVRTAQ 220
            V+ G     +    L     +D + VE  +PQ+  P +         A V  +      
Sbjct: 188 TVDEGNFLRTSDAQGLFSVTQIDPIAVEFSLPQQMLPTLQGLIAAPTQASVDAYLGADTD 247

Query: 221 GEQLKPVEFSLFSYADPQ----SHTFKTRLELPQNSAALVPGMWVKTEFNYG-QREVLVV 275
           G+    +     S  D Q    + T + + E    S  L PG  V  +      +  LVV
Sbjct: 248 GQTGDLLGEGHLSLIDNQISSTTGTLRAKAEFNNASQRLWPGQLVTIKIQTALDKNALVV 307

Query: 276 PSSAVLRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLELGDVVAT 326
           P + V R  +   VYRVN  +  + PV++     D V ++ G++ GDV+ +
Sbjct: 308 PPTVVQRGLDSHFVYRVNGDKVDVVPVQVTYQDSD-VNIIKGVQAGDVLVS 357