Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 81/299 (27%), Positives = 128/299 (42%), Gaps = 14/299 (4%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V  +N  ++ ++  G +V +  +    VK   +L EI       AL  AQ  L    A
Sbjct: 86  GTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEIDPRSYQNALLQAQGTLMQNQA 145

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
           Q + AQ  + RYR L+ + +I+K  +D+AEA        VK+ Q AV+ AK +L +T I 
Sbjct: 146 QLKNAQVDVQRYRDLYAQDSIAKQTLDTAEALVLQYQGTVKTNQGAVDDAKLNLEFTKIR 205

Query: 162 APYDGIVTQRMVELGETVAPGT-----------PLLRGFSLDELRVETEIPQRYQPYVAD 210
           AP  G V  R V++G  VA              P+   F+L E  +ET + + +      
Sbjct: 206 APISGRVGLRQVDVGNLVAANDTTFLAVITQTQPISVAFTLPENTLETVLTRYHAGNKLP 265

Query: 211 VSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQR 270
           V  +  R    +Q   V  SL +  D  + T K +        AL P  +V         
Sbjct: 266 VEAWD-RGDVKQQAVGVLQSLDNQIDVTTGTLKFKARFDNKDQALFPNQFVNVHLLADTL 324

Query: 271 EVLVVPSSAVLRRAELSAVYRVNNGQRALN--PVRLGQVYGDYVEVLSGLELGDVVATQ 327
             +V+  SA ++         V +G + +   P+ +G   GD   +  GL+ GD V  +
Sbjct: 325 HNVVLAPSAAIQFGNTGTFVYVLDGDKKVKVQPLVVGDTDGDNTVIKEGLKAGDRVVLE 383