Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 93/323 (28%), Positives = 144/323 (44%), Gaps = 22/323 (6%)

Query: 28  TVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSA 87
           T++ + ++   EL G +       + A+ +G V+         VK+  VL  I      A
Sbjct: 40  TLEAKPLAITSELSGRIAAPRIAEVRARVAGVVMQRVFKEGHDVKQGDVLFRIDPAPFKA 99

Query: 88  ALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAA 147
            LD+AQA L+ A A   +A+ Q  RY QL    AIS    D+A A  R  +A V + +AA
Sbjct: 100 DLDSAQANLSKAEADAFKARLQEQRYSQLVEGNAISGQDYDNARAAVRQTNAEVAANKAA 159

Query: 148 VEQAKESLGYTNITAPYDGIVTQRMVELGETVA--PGTPLLRGFSLDELRVE-----TEI 200
           VE+A+ +LGY  +TAP  G + + +V  G  V     TPL     LD +  +      E+
Sbjct: 160 VERARLNLGYATVTAPISGRIGRALVTEGALVGQNEATPLALIQQLDPIHADLTQSTREL 219

Query: 201 PQRYQPYVA--------DVSQFTVRTAQGEQLKPVEFSLF---SYADPQSHTFKTRLELP 249
               + + A        D ++ T+    G  L P+   L       DP +     R E P
Sbjct: 220 NDLRRAFRAGSLKQVGQDQAKATLIEDDG-SLYPLPGKLLFAEISVDPGTGQIILRSEFP 278

Query: 250 QNSAALVPGMWVKTEFNYG-QREVLVVPSSAVLR-RAELSAVYRVNNGQR-ALNPVRLGQ 306
                L+PG +V+        ++ + VP  A+ R  A +  V  ++ GQ  +  PV LG 
Sbjct: 279 NPDLDLLPGSFVRVRLEQAVDKQGISVPQRAITRDSAGIPMVLLLDAGQTVSQQPVELGA 338

Query: 307 VYGDYVEVLSGLELGDVVATQAV 329
           V  D   V SGL+ GD +  + +
Sbjct: 339 VINDRWIVSSGLKPGDRIIVEGL 361