Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 96.7 bits (239), Expect = 8e-25
 Identities = 94/340 (27%), Positives = 150/340 (44%), Gaps = 20/340 (5%)

Query: 3   ALSWSIALVLASSAYAQNQDSNER--FTVKTELISQIVE-LDGVVQPVNQGSLAAQTSGR 59
           AL  S+  +LA   + +   +  R    V+ +  SQ ++   G V+   +  LA +  G+
Sbjct: 9   ALPVSLVFLLAGCGHEEAAQTTIRPAMVVQPQPSSQSMDSYPGEVRARYEPDLAFRIGGK 68

Query: 60  VVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPK 119
           V    V+  + VK +Q L E+        L+A +AQ+A A A     +A+ +RY+ L  +
Sbjct: 69  VSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDR 128

Query: 120 GAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETV 179
             +S+ Q D++E   R+  A +K  +A  + A    GY  + AP DG+V +R+VE+G+ V
Sbjct: 129 QMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVV 188

Query: 180 APGTPLLRGFSLDELRVETEIPQR-------YQPYVADV-SQFTVR-TAQGEQLKPVEFS 230
           + G  +    +  E  V   +P++        QP   ++ SQ   R T +  +L P    
Sbjct: 189 SAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPA--- 245

Query: 231 LFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVY 290
               ADP+S TF  R+           G   +          L VP SA+      S V+
Sbjct: 246 ----ADPKSRTFAARVAFTGGKVPAELGQSARVFIQVDGDIPLSVPLSALSAENGASYVW 301

Query: 291 RVN-NGQRALNPVRLGQVYGDYVEVLSGLELGDVVATQAV 329
           RV  +      PVR+G      V VL GL   D V    V
Sbjct: 302 RVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGV 341