Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., Membrane-fusion protein from Variovorax sp. SCN45

 Score =  124 bits (311), Expect = 3e-33
 Identities = 85/275 (30%), Positives = 139/275 (50%), Gaps = 3/275 (1%)

Query: 52  LAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLN 111
           +A++ +G +  L V     V++  +LL I A    AA+  A+A + +A    R+AQ  +N
Sbjct: 1   VASRVTGFIRQLDVREGQAVRRGDLLLRIDASDIDAAIAQARAGVQAAQEAWRDAQHDVN 60

Query: 112 RYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQR 171
           +  QL P GAIS D +  +  R  +  AA++ AQ+A+  A+    Y  IT+P DG+V   
Sbjct: 61  QNAQLVPAGAISADALRKSRVREETTRAALEQAQSALAAAQAQRNYVTITSPVDGVVVSV 120

Query: 172 MVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVR--TAQGEQLKPVEF 229
               GE  APG PL+   S + L  +  +P+R    V       VR      E+LK    
Sbjct: 121 ARRSGEMAAPGAPLMTVESREVLLFKAFVPERSLAAVKAGDSIPVRIDALGDERLKGRVR 180

Query: 230 SLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAV 289
            +    D  +  ++  + LP++ A L+PGM+ + E    ++  + VP +A++RR  L  V
Sbjct: 181 GVVPSGDGVTRRYEVDIVLPRD-ARLLPGMFGRLEILLDEKRAVTVPRAALVRRGGLDGV 239

Query: 290 YRVNNGQRALNPVRLGQVYGDYVEVLSGLELGDVV 324
           + + +G      +R GQ  GD VEV +GL  G+ +
Sbjct: 240 FVLQDGVARFRWLRTGQRLGDVVEVSAGLSDGETI 274