Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  122 bits (307), Expect = 1e-32
 Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 9/302 (2%)

Query: 30  KTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAAL 89
           +T    Q + L G +Q   Q  ++A+ SG +     D+   V+K ++L EI   +    L
Sbjct: 80  RTPTAGQTLSLPGTLQGFVQSPISARASGYLKRWTKDIGSRVEKGELLAEIETPEIDQQL 139

Query: 90  DAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVE 149
             A A  A A +    A++  +R+  L  K  +S+ ++D   +    A + V +A A V+
Sbjct: 140 SQAVAARAQAASGLELARSTADRWEALRKKDVVSQQELDERRSAVAQATSNVAAADANVQ 199

Query: 150 QAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSL------DELRVETEIPQR 203
           + K++ G+  + AP+ G++T+R V++G+ +  G+    G +L      D LRV   +PQ 
Sbjct: 200 RLKQTEGFKRVVAPFAGVITRRNVDVGDLIDAGSGGGAGRALFLLAQTDPLRVYINVPQA 259

Query: 204 YQPYVADVSQFTVRTAQ--GEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWV 261
           Y   V       V  A+  G+  K          D  +   +  + LP +  AL+PG +V
Sbjct: 260 YAQLVKAGQPVVVTQAELRGQTFKGQVARTAGSIDTTTRMMQVEVSLPNSDGALLPGAYV 319

Query: 262 KTEFNYGQREVLVVPSSAVLRRAELSAVYRVN-NGQRALNPVRLGQVYGDYVEVLSGLEL 320
           +          L VPS+A+L RAE + +  V+  G+  L  V LG+ YG+ VEV+ GLE 
Sbjct: 320 QVSLPLAASRTLSVPSNALLFRAEGTRIAVVDPQGRVNLRAVTLGRNYGENVEVIDGLEH 379

Query: 321 GD 322
            D
Sbjct: 380 TD 381